Wall clock time and date at job start Thu Apr 9 2020 13:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.57957 * 2 1 4 4 C 1.53118 * 109.52407 * 120.16073 * 2 1 3 5 5 C 1.53036 * 109.28007 * 62.24412 * 4 2 1 6 6 N 1.46846 * 109.52162 * 59.18140 * 5 4 2 7 7 C 1.46846 * 111.19997 * 298.26076 * 6 5 4 8 8 C 1.53030 * 109.52377 * 61.74000 * 7 6 5 9 9 H 1.08997 * 109.53617 * 60.78297 * 8 7 6 10 10 C 1.50700 * 109.50083 * 180.88134 * 8 7 6 11 11 H 1.08009 * 119.99795 * 119.80488 * 10 8 7 12 12 C 1.37877 * 120.00464 * 299.80240 * 10 8 7 13 13 N 1.31514 * 119.99422 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00319 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47433 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47416 * 119.99946 * 14 12 10 17 17 H 1.48503 * 109.47326 * 239.99895 * 14 12 10 18 18 H 1.09007 * 109.46919 * 299.84327 * 1 2 3 19 19 H 1.08994 * 109.46844 * 59.83875 * 1 2 3 20 20 H 1.08994 * 109.47061 * 179.84142 * 1 2 3 21 21 H 1.09000 * 109.47331 * 180.16373 * 3 2 1 22 22 H 1.09006 * 109.46686 * 300.16051 * 3 2 1 23 23 H 1.09001 * 109.46873 * 60.15501 * 3 2 1 24 24 H 1.09008 * 109.50062 * 302.30941 * 4 2 1 25 25 H 1.09002 * 109.53946 * 182.20694 * 4 2 1 26 26 H 1.08998 * 109.46728 * 299.16963 * 5 4 2 27 27 H 1.09003 * 109.45634 * 179.19307 * 5 4 2 28 28 H 1.00904 * 111.00089 * 62.35801 * 6 5 4 29 29 H 1.08999 * 109.46373 * 181.76104 * 7 6 5 30 30 H 1.08998 * 109.45881 * 301.72191 * 7 6 5 31 31 H 0.97004 * 119.99520 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0417 -0.7251 1.2478 5 6 1.5766 -2.1826 1.2117 6 7 2.0923 -2.8324 0.0000 7 6 1.5765 -2.1826 -1.2116 8 6 2.0417 -0.7251 -1.2478 9 1 3.1309 -0.6906 -1.2678 10 6 1.4942 -0.0528 -2.4804 11 1 0.8461 0.8059 -2.3844 12 6 1.8206 -0.5337 -3.7307 13 7 2.6094 -1.5795 -3.8475 14 14 1.1426 0.3002 -5.2585 15 1 0.2872 1.4463 -4.8586 16 1 2.2672 0.7908 -6.0951 17 1 0.3348 -0.6732 -6.0365 18 1 -0.3633 0.5114 0.8915 19 1 -0.3633 0.5163 -0.8885 20 1 -0.3633 -1.0276 -0.0028 21 1 3.1327 1.4395 -0.0029 22 1 1.6780 1.9569 -0.8886 23 1 1.6826 1.9552 0.8914 24 1 1.6457 -0.2387 2.1393 25 1 3.1310 -0.6911 1.2681 26 1 0.4871 -2.2161 1.2060 27 1 1.9514 -2.7052 2.0917 28 1 3.1012 -2.8488 0.0000 29 1 1.9512 -2.7054 -2.0916 30 1 0.4871 -2.2161 -1.2059 31 1 2.8388 -1.9181 -4.7271 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260216687.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:51 Heat of formation + Delta-G solvation = -37.809644 kcal Electronic energy + Delta-G solvation = -12034.400966 eV Core-core repulsion = 10120.949640 eV Total energy + Delta-G solvation = -1913.451326 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.38888 -35.04950 -34.58776 -31.30866 -28.11383 -28.03758 -26.41437 -23.10309 -22.74371 -19.47823 -18.16563 -16.72034 -16.25244 -15.51451 -15.07091 -14.93154 -14.64330 -14.34310 -13.75163 -12.98223 -12.84314 -12.63123 -12.48868 -12.40006 -12.23143 -12.02590 -11.90800 -11.57725 -11.42026 -10.93627 -10.55638 -10.34129 -8.95499 -8.05453 -6.14100 1.39083 1.42291 1.51851 2.44755 3.22179 3.74348 4.05399 4.15324 4.27488 4.58634 4.65284 4.74490 4.85172 4.95598 4.99794 5.10488 5.12464 5.16415 5.26260 5.35389 5.50309 5.59387 5.59827 5.70352 5.97366 6.09520 6.24552 6.56789 6.70488 6.98168 7.51392 8.99762 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.049054 B = 0.015839 C = 0.013495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.661443 B = 1767.418702 C = 2074.314125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.122 4.122 4 C -0.138 4.138 5 C 0.057 3.943 6 N -0.698 5.698 7 C 0.072 3.928 8 C 0.033 3.967 9 H -0.015 1.015 10 C -0.509 4.509 11 H 0.057 0.943 12 C 0.009 3.991 13 N -0.920 5.920 14 Si 0.946 3.054 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.283 1.283 18 H 0.058 0.942 19 H 0.041 0.959 20 H 0.045 0.955 21 H 0.035 0.965 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.331 0.669 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 2.171 8.090 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C -0.177 4.177 5 C -0.072 4.072 6 N -0.325 5.325 7 C -0.057 4.057 8 C 0.013 3.987 9 H 0.003 0.997 10 C -0.548 4.548 11 H 0.075 0.925 12 C -0.188 4.188 13 N -0.560 5.560 14 Si 0.773 3.227 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.210 1.210 18 H 0.077 0.923 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.729 1.555 7.961 8.558 hybrid contribution 0.473 1.137 -1.322 1.806 sum -2.256 2.691 6.639 7.511 Atomic orbital electron populations 1.21744 0.94882 1.00818 1.00528 1.20590 0.95753 0.95188 0.94917 1.21677 0.99517 0.96082 1.00685 1.22271 0.99917 0.97727 0.97831 1.22077 1.00244 0.92078 0.92810 1.60840 1.13396 1.55396 1.02879 1.21919 0.97379 0.95129 0.91286 1.19213 0.93525 0.93531 0.92448 0.99695 1.21511 1.28676 1.13269 0.91357 0.92528 1.25701 0.95646 0.95763 1.01737 1.70010 1.37352 1.25030 1.23649 0.85683 0.78127 0.78706 0.80208 1.19178 1.21163 1.20955 0.92267 0.93948 0.93602 0.94559 0.93914 0.92035 0.90407 0.93310 0.91475 0.89756 0.85312 0.91650 0.94232 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 7.61 71.98 0.55 -3.95 16 2 C -0.06 -2.51 0.53 -52.10 -0.03 -2.54 16 3 C -0.12 -4.52 8.26 71.98 0.59 -3.92 16 4 C -0.14 -4.54 4.87 30.65 0.15 -4.39 16 5 C 0.06 1.88 6.31 86.33 0.54 2.43 16 6 N -0.70 -27.88 6.87 -514.03 -3.53 -31.41 16 7 C 0.07 3.46 5.36 86.32 0.46 3.92 16 8 C 0.03 1.60 1.54 -11.49 -0.02 1.58 16 9 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 10 C -0.51 -27.24 7.13 25.60 0.18 -27.06 16 11 H 0.06 2.99 5.70 -2.91 -0.02 2.98 16 12 C 0.01 0.52 5.30 84.65 0.45 0.97 16 13 N -0.92 -53.18 11.34 21.45 0.24 -52.94 16 14 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16 19 H 0.04 1.69 6.50 -2.39 -0.02 1.68 16 20 H 0.05 1.71 4.92 -2.39 -0.01 1.70 16 21 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 22 H 0.04 1.71 6.80 -2.38 -0.02 1.69 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 2.20 6.51 -2.39 -0.02 2.19 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.33 13.02 8.86 -89.69 -0.79 12.22 16 29 H 0.07 3.62 6.11 -2.39 -0.01 3.60 16 30 H 0.04 1.93 6.51 -2.39 -0.02 1.91 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -57.78 233.18 1.94 -55.84 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.31 Total: 15.64 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 2.88 Total: -32.97 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -3.29 Total: -84.35 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -57.78 1.94 -55.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216687.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.031 kcal (2) G-P(sol) polarization free energy of solvation -57.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds