Wall clock time and date at job start Thu Apr 9 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 108.97614 * 2 1 4 4 H 1.08006 * 120.00217 * 121.05909 * 3 2 1 5 5 C 1.37880 * 120.00460 * 301.05457 * 3 2 1 6 6 N 1.31513 * 119.99405 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 120.00381 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.47175 * 60.00377 * 7 5 3 9 9 H 1.48504 * 109.47014 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47107 * 300.00278 * 7 5 3 11 11 C 1.53869 * 108.99870 * 119.00349 * 2 1 3 12 12 C 1.54168 * 112.00578 * 79.61950 * 11 2 1 13 13 C 1.50760 * 112.60654 * 318.45280 * 12 11 2 14 14 C 1.54432 * 109.02177 * 93.01640 * 13 12 11 15 15 N 1.39780 * 111.77265 * 282.59340 * 14 13 12 16 16 C 1.47635 * 114.75952 * 62.27703 * 15 14 13 17 17 H 1.09000 * 109.47055 * 156.03085 * 1 2 3 18 18 H 1.08996 * 109.47030 * 276.02827 * 1 2 3 19 19 H 1.08995 * 109.47073 * 36.02946 * 1 2 3 20 20 H 0.97000 * 120.00121 * 179.97438 * 6 5 3 21 21 H 1.08995 * 108.98682 * 318.94982 * 11 2 1 22 22 H 1.08998 * 108.87300 * 200.20833 * 11 2 1 23 23 H 1.08998 * 108.85534 * 197.65193 * 12 11 2 24 24 H 1.08997 * 108.77628 * 79.19966 * 12 11 2 25 25 H 1.09005 * 109.54187 * 333.15879 * 13 12 11 26 26 H 1.09001 * 109.61886 * 212.92642 * 13 12 11 27 27 H 1.09006 * 109.01966 * 162.00671 * 14 13 12 28 28 H 1.09000 * 108.96068 * 43.14408 * 14 13 12 29 29 H 1.00898 * 110.99662 * 189.13177 * 15 14 13 30 30 H 1.08997 * 109.74923 * 36.84221 * 16 15 14 31 31 H 1.08999 * 109.74283 * 157.51489 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0200 1.4251 0.0000 4 1 2.6520 1.7789 0.8012 5 6 1.6618 2.2774 -1.0229 6 7 0.8919 1.8467 -1.9983 7 14 2.2698 4.0436 -1.0232 8 1 3.7545 4.0560 -1.0495 9 1 1.7471 4.7468 -2.2223 10 1 1.7906 4.7323 0.2020 11 6 2.0309 -0.7054 1.2724 12 6 1.9755 -2.2405 1.1417 13 6 0.7152 -2.7196 0.4671 14 6 0.9795 -2.8657 -1.0474 15 7 0.9743 -1.6278 -1.6965 16 6 2.0223 -0.6898 -1.2475 17 1 -0.3633 -0.9390 -0.4175 18 1 -0.3633 0.1079 1.0219 19 1 -0.3633 0.8310 -0.6044 20 1 0.6395 2.4463 -2.7178 21 1 1.4115 -0.3987 2.1151 22 1 3.0609 -0.4027 1.4611 23 1 2.0313 -2.6811 2.1372 24 1 2.8349 -2.5744 0.5605 25 1 -0.0832 -1.9956 0.6297 26 1 0.4226 -3.6845 0.8810 27 1 0.2065 -3.4986 -1.4835 28 1 1.9503 -3.3394 -1.1935 29 1 0.9988 -1.7448 -2.6984 30 1 2.9382 -1.2385 -1.0279 31 1 2.2133 0.0489 -2.0258 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260307753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:58 Heat of formation + Delta-G solvation = 12.515869 kcal Electronic energy + Delta-G solvation = -12170.972990 eV Core-core repulsion = 10259.703943 eV Total energy + Delta-G solvation = -1911.269048 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.66253 -33.79143 -32.39729 -30.45960 -26.76867 -25.02747 -24.27183 -22.34904 -19.47782 -17.82257 -16.28032 -15.31432 -14.55772 -14.23509 -13.51276 -13.37636 -12.91901 -12.38211 -11.57842 -11.18549 -11.13597 -10.81448 -10.63409 -10.50687 -10.03423 -9.94818 -9.80061 -9.57758 -9.11322 -8.72865 -8.40537 -8.17926 -7.03183 -5.80521 -3.93459 3.36727 3.41496 3.44643 4.51262 5.23393 5.44314 5.59014 5.67214 5.88898 6.17132 6.25898 6.33945 6.47805 6.65907 6.73015 6.81157 6.96765 7.03524 7.19473 7.32118 7.44847 7.67756 7.74361 7.92119 8.20979 8.39466 8.53624 8.67374 8.73446 9.10438 9.69943 11.16472 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.063600 B = 0.014899 C = 0.013488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.146676 B = 1878.852922 C = 2075.364099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 C -0.509 4.509 4 H 0.049 0.951 5 C 0.062 3.938 6 N -0.873 5.873 7 Si 0.883 3.117 8 H -0.280 1.280 9 H -0.289 1.289 10 H -0.279 1.279 11 C -0.104 4.104 12 C -0.114 4.114 13 C -0.137 4.137 14 C 0.088 3.912 15 N -0.689 5.689 16 C 0.095 3.905 17 H 0.065 0.935 18 H -0.005 1.005 19 H 0.074 0.926 20 H 0.256 0.744 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.045 0.955 27 H 0.050 0.950 28 H -0.006 1.006 29 H 0.328 0.672 30 H -0.003 1.003 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -6.324 1.340 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.070 3.930 3 C -0.548 4.548 4 H 0.067 0.933 5 C -0.139 4.139 6 N -0.511 5.511 7 Si 0.711 3.289 8 H -0.206 1.206 9 H -0.215 1.215 10 H -0.205 1.205 11 C -0.142 4.142 12 C -0.152 4.152 13 C -0.174 4.174 14 C -0.043 4.043 15 N -0.320 5.320 16 C -0.032 4.032 17 H 0.083 0.917 18 H 0.014 0.986 19 H 0.093 0.907 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.012 0.988 29 H 0.146 0.854 30 H 0.016 0.984 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.110 -6.026 1.602 6.236 hybrid contribution 1.174 0.615 -0.360 1.373 sum 1.064 -5.411 1.242 5.653 Atomic orbital electron populations 1.22183 0.97277 1.03145 0.96596 1.17881 0.93893 0.92697 0.88528 1.21281 1.30385 0.95509 1.07584 0.93262 1.24929 0.95306 0.97804 0.95905 1.69980 1.35220 1.34823 1.11070 0.86818 0.78993 0.85820 0.77236 1.20589 1.21452 1.20525 1.22133 0.99731 0.92270 1.00067 1.21388 0.97436 0.97886 0.98496 1.21892 1.00228 1.00538 0.94781 1.20672 0.97211 0.91230 0.95235 1.57260 1.53603 1.12831 1.08275 1.21798 0.87968 0.92379 1.01058 0.91686 0.98556 0.90748 0.93352 0.93940 0.93987 0.94220 0.93683 0.88386 0.93605 0.93163 0.98787 0.85371 0.98444 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 6.85 37.16 0.25 -3.09 16 2 C 0.07 1.75 0.49 -156.31 -0.08 1.67 16 3 C -0.51 -13.92 7.85 -34.44 -0.27 -14.19 16 4 H 0.05 1.36 7.68 -52.48 -0.40 0.95 16 5 C 0.06 1.68 4.69 -17.82 -0.08 1.59 16 6 N -0.87 -24.06 9.67 55.43 0.54 -23.52 16 7 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C -0.10 -2.29 4.85 -25.67 -0.12 -2.42 16 12 C -0.11 -2.15 5.32 -27.24 -0.14 -2.30 16 13 C -0.14 -2.47 5.55 -27.10 -0.15 -2.62 16 14 C 0.09 1.59 5.82 -6.74 -0.04 1.55 16 15 N -0.69 -14.23 4.26 -118.54 -0.51 -14.74 16 16 C 0.10 2.25 5.14 -4.52 -0.02 2.22 16 17 H 0.06 1.52 3.85 -51.93 -0.20 1.32 16 18 H 0.00 -0.11 7.55 -51.93 -0.39 -0.50 16 19 H 0.07 2.07 5.69 -51.93 -0.30 1.77 16 20 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 21 H 0.04 0.92 7.61 -51.93 -0.40 0.53 16 22 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.85 6.57 -51.93 -0.34 0.51 16 25 H 0.10 1.94 4.49 -51.93 -0.23 1.71 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H -0.01 -0.10 7.54 -51.93 -0.39 -0.49 16 29 H 0.33 6.29 8.85 -39.29 -0.35 5.95 16 30 H 0.00 -0.06 6.66 -51.93 -0.35 -0.41 16 31 H 0.09 2.41 5.96 -51.93 -0.31 2.10 16 LS Contribution 224.45 15.07 3.38 3.38 Total: -1.00 -27.28 224.45 -6.73 -34.01 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.47 Total: 2.24 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.66 Total: -17.58 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.03 Total: -38.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -27.28 -6.73 -34.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.527 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds