Wall clock time and date at job start Thu Apr 9 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 108.97614 * 2 1 4 4 H 1.08006 * 120.00217 * 121.05909 * 3 2 1 5 5 C 1.37880 * 120.00460 * 301.05457 * 3 2 1 6 6 N 1.31513 * 119.99405 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 120.00381 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.47175 * 60.00377 * 7 5 3 9 9 H 1.48504 * 109.47014 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47107 * 300.00278 * 7 5 3 11 11 C 1.53869 * 108.99870 * 119.00349 * 2 1 3 12 12 C 1.54168 * 112.00578 * 79.61950 * 11 2 1 13 13 C 1.50760 * 112.60654 * 318.45280 * 12 11 2 14 14 C 1.54432 * 109.02177 * 93.01640 * 13 12 11 15 15 N 1.39780 * 111.77265 * 282.59340 * 14 13 12 16 16 C 1.47635 * 114.75952 * 62.27703 * 15 14 13 17 17 H 1.09000 * 109.47055 * 156.03085 * 1 2 3 18 18 H 1.08996 * 109.47030 * 276.02827 * 1 2 3 19 19 H 1.08995 * 109.47073 * 36.02946 * 1 2 3 20 20 H 0.97000 * 120.00121 * 179.97438 * 6 5 3 21 21 H 1.08995 * 108.98682 * 318.94982 * 11 2 1 22 22 H 1.08998 * 108.87300 * 200.20833 * 11 2 1 23 23 H 1.08998 * 108.85534 * 197.65193 * 12 11 2 24 24 H 1.08997 * 108.77628 * 79.19966 * 12 11 2 25 25 H 1.09005 * 109.54187 * 333.15879 * 13 12 11 26 26 H 1.09001 * 109.61886 * 212.92642 * 13 12 11 27 27 H 1.09006 * 109.01966 * 162.00671 * 14 13 12 28 28 H 1.09000 * 108.96068 * 43.14408 * 14 13 12 29 29 H 1.00898 * 110.99662 * 189.13177 * 15 14 13 30 30 H 1.08997 * 109.74923 * 36.84221 * 16 15 14 31 31 H 1.08999 * 109.74283 * 157.51489 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0200 1.4251 0.0000 4 1 2.6520 1.7789 0.8012 5 6 1.6618 2.2774 -1.0229 6 7 0.8919 1.8467 -1.9983 7 14 2.2698 4.0436 -1.0232 8 1 3.7545 4.0560 -1.0495 9 1 1.7471 4.7468 -2.2223 10 1 1.7906 4.7323 0.2020 11 6 2.0309 -0.7054 1.2724 12 6 1.9755 -2.2405 1.1417 13 6 0.7152 -2.7196 0.4671 14 6 0.9795 -2.8657 -1.0474 15 7 0.9743 -1.6278 -1.6965 16 6 2.0223 -0.6898 -1.2475 17 1 -0.3633 -0.9390 -0.4175 18 1 -0.3633 0.1079 1.0219 19 1 -0.3633 0.8310 -0.6044 20 1 0.6395 2.4463 -2.7178 21 1 1.4115 -0.3987 2.1151 22 1 3.0609 -0.4027 1.4611 23 1 2.0313 -2.6811 2.1372 24 1 2.8349 -2.5744 0.5605 25 1 -0.0832 -1.9956 0.6297 26 1 0.4226 -3.6845 0.8810 27 1 0.2065 -3.4986 -1.4835 28 1 1.9503 -3.3394 -1.1935 29 1 0.9988 -1.7448 -2.6984 30 1 2.9382 -1.2385 -1.0279 31 1 2.2133 0.0489 -2.0258 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260307753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:58 Heat of formation + Delta-G solvation = -4.061693 kcal Electronic energy + Delta-G solvation = -12171.691848 eV Core-core repulsion = 10259.703943 eV Total energy + Delta-G solvation = -1911.987905 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35875 -35.64262 -34.07466 -32.31445 -28.55378 -27.06212 -25.99152 -24.08082 -20.99647 -19.72970 -18.08937 -17.22795 -16.40561 -15.91099 -15.21305 -15.02319 -14.68614 -14.10047 -13.28429 -13.05779 -12.94176 -12.69086 -12.44174 -12.30296 -11.88432 -11.82157 -11.38933 -11.27992 -10.91459 -10.62871 -10.33829 -10.20477 -8.68583 -7.87847 -6.06782 1.43799 1.45058 1.51414 2.50086 3.28868 3.73494 4.12418 4.25506 4.33686 4.60341 4.64110 4.82515 4.88244 5.09596 5.11857 5.20103 5.26189 5.31557 5.46406 5.58583 5.61312 5.72453 5.78175 5.86028 6.30177 6.49748 6.59438 6.82601 7.05117 7.06084 7.58709 9.06505 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.063600 B = 0.014899 C = 0.013488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.146676 B = 1878.852922 C = 2075.364099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.061 3.939 3 C -0.534 4.534 4 H 0.037 0.963 5 C 0.023 3.977 6 N -0.886 5.886 7 Si 0.937 3.063 8 H -0.277 1.277 9 H -0.285 1.285 10 H -0.280 1.280 11 C -0.103 4.103 12 C -0.109 4.109 13 C -0.136 4.136 14 C 0.083 3.917 15 N -0.695 5.695 16 C 0.107 3.893 17 H 0.081 0.919 18 H -0.007 1.007 19 H 0.040 0.960 20 H 0.255 0.745 21 H 0.037 0.963 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.002 0.998 29 H 0.336 0.664 30 H -0.002 1.002 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 -7.517 1.602 7.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 C -0.573 4.573 4 H 0.056 0.944 5 C -0.177 4.177 6 N -0.524 5.524 7 Si 0.764 3.236 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.206 1.206 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.173 4.173 14 C -0.048 4.048 15 N -0.326 5.326 16 C -0.021 4.021 17 H 0.099 0.901 18 H 0.012 0.988 19 H 0.059 0.941 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.020 0.980 29 H 0.155 0.845 30 H 0.016 0.984 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.147 -7.230 1.863 7.468 hybrid contribution 1.175 0.971 -0.433 1.585 sum 1.028 -6.259 1.430 6.502 Atomic orbital electron populations 1.22075 0.97517 1.02515 0.95793 1.17956 0.93676 0.91975 0.90333 1.21601 1.30723 0.97451 1.07501 0.94437 1.25496 0.95521 1.00937 0.95704 1.70098 1.35517 1.35610 1.11150 0.85958 0.78554 0.81961 0.77090 1.20257 1.21019 1.20591 1.22056 0.98817 0.94808 0.98407 1.21339 0.97993 0.95154 1.00197 1.21884 0.98921 1.01735 0.94806 1.20815 0.98529 0.90159 0.95311 1.57160 1.52377 1.13957 1.09141 1.21441 0.88780 0.92350 0.99500 0.90096 0.98765 0.94075 0.93566 0.94388 0.94897 0.91716 0.93698 0.90319 0.90195 0.90494 0.98026 0.84507 0.98404 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 6.85 71.98 0.49 -5.53 16 2 C 0.06 3.02 0.49 -53.35 -0.03 3.00 16 3 C -0.53 -29.60 7.85 25.60 0.20 -29.40 16 4 H 0.04 2.10 7.68 -2.91 -0.02 2.08 16 5 C 0.02 1.28 4.69 84.66 0.40 1.67 16 6 N -0.89 -49.34 9.67 21.45 0.21 -49.13 16 7 Si 0.94 43.89 29.54 68.60 2.03 45.91 16 8 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 C -0.10 -4.44 4.85 31.28 0.15 -4.29 16 12 C -0.11 -3.81 5.32 30.26 0.16 -3.65 16 13 C -0.14 -4.44 5.55 30.35 0.17 -4.28 16 14 C 0.08 2.72 5.82 88.07 0.51 3.24 16 15 N -0.70 -27.64 4.26 -528.94 -2.25 -29.90 16 16 C 0.11 5.03 5.14 85.45 0.44 5.47 16 17 H 0.08 3.70 3.85 -2.39 -0.01 3.70 16 18 H -0.01 -0.33 7.55 -2.39 -0.02 -0.34 16 19 H 0.04 2.29 5.69 -2.39 -0.01 2.28 16 20 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 21 H 0.04 1.62 7.61 -2.39 -0.02 1.60 16 22 H 0.03 1.43 7.92 -2.39 -0.02 1.41 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.57 6.57 -2.39 -0.02 1.55 16 25 H 0.08 2.92 4.49 -2.38 -0.01 2.91 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.00 0.06 7.54 -2.39 -0.02 0.04 16 29 H 0.34 12.41 8.85 -89.70 -0.79 11.62 16 30 H 0.00 -0.10 6.66 -2.39 -0.02 -0.11 16 31 H 0.06 3.18 5.96 -2.39 -0.01 3.16 16 Total: -1.00 -57.40 224.45 2.80 -54.60 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.32 Total: 12.28 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 2.50 Total: -33.76 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -2.05 Total: -79.03 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -57.40 2.80 -54.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.540 kcal (2) G-P(sol) polarization free energy of solvation -57.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds