Wall clock time and date at job start Thu Apr 9 2020 13:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47243 * 2 1 4 4 H 1.09001 * 109.46925 * 305.91970 * 3 2 1 5 5 C 1.50698 * 109.47516 * 185.91763 * 3 2 1 6 6 H 1.07997 * 119.99839 * 275.19515 * 5 3 2 7 7 C 1.37874 * 120.00077 * 95.19116 * 5 3 2 8 8 N 1.31508 * 119.99821 * 184.71339 * 7 5 3 9 9 Si 1.86799 * 120.00114 * 4.71017 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.82882 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.82676 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.82915 * 9 7 5 13 13 C 1.52997 * 109.46884 * 65.91396 * 3 2 1 14 14 H 1.09001 * 112.96171 * 316.65020 * 13 3 2 15 15 C 1.53939 * 113.76102 * 184.99958 * 13 3 2 16 16 C 1.53931 * 86.34364 * 221.96509 * 15 13 3 17 17 N 1.47962 * 113.75788 * 88.44165 * 13 3 2 18 18 C 1.46900 * 111.00065 * 251.89656 * 17 13 3 19 19 H 1.08996 * 109.46973 * 300.00266 * 1 2 3 20 20 H 1.09004 * 109.46985 * 59.99709 * 1 2 3 21 21 H 1.08993 * 109.46860 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47419 * 240.00027 * 2 1 3 23 23 H 1.08995 * 109.47324 * 119.99831 * 2 1 3 24 24 H 0.97001 * 120.00360 * 180.02562 * 8 7 5 25 25 H 1.09007 * 113.73135 * 336.32751 * 15 13 3 26 26 H 1.08997 * 113.73360 * 107.49723 * 15 13 3 27 27 H 1.09004 * 113.76234 * 138.03686 * 16 15 13 28 28 H 1.08996 * 113.75849 * 269.29058 * 16 15 13 29 29 H 1.09003 * 109.46785 * 60.00585 * 18 17 13 30 30 H 1.08996 * 109.47145 * 179.97438 * 18 17 13 31 31 H 1.08990 * 109.47352 * 300.00186 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5928 1.9860 -0.8323 5 6 3.5399 1.4451 -0.1465 6 1 4.1677 1.3294 0.7246 7 6 4.1106 1.5952 -1.3926 8 7 5.4150 1.5048 -1.5335 9 14 3.0311 1.9267 -2.8805 10 1 2.7613 3.3834 -2.9816 11 1 3.7263 1.4656 -4.1090 12 1 1.7474 1.1945 -2.7338 13 6 1.6550 2.1195 1.3169 14 1 0.6320 1.9017 1.6238 15 6 2.0144 3.6153 1.3736 16 6 2.4804 3.3477 2.8161 17 7 2.6539 1.9403 2.3937 18 6 2.1583 1.0168 3.4231 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8899 24 1 5.8166 1.6107 -2.4101 25 1 2.8210 3.8987 0.6973 26 1 1.1508 4.2768 1.3054 27 1 3.4141 3.8466 3.0757 28 1 1.6999 3.4907 3.5633 29 1 1.9529 0.0461 2.9718 30 1 2.9121 0.9027 4.2020 31 1 1.2426 1.4160 3.8588 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260311031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:00 Heat of formation + Delta-G solvation = 5.925280 kcal Electronic energy + Delta-G solvation = -11816.054615 eV Core-core repulsion = 9904.499778 eV Total energy + Delta-G solvation = -1911.554837 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79853 -36.10868 -33.88888 -31.36222 -29.67151 -26.48252 -24.82651 -24.21879 -21.60403 -20.02308 -18.81730 -16.68187 -16.55984 -16.04852 -15.20629 -14.68897 -14.58688 -14.30260 -13.85263 -13.63932 -13.28516 -12.69452 -12.47303 -12.42500 -12.07327 -11.94194 -11.61534 -11.57810 -11.16765 -10.97106 -10.71435 -10.51164 -9.23927 -8.08896 -6.06190 1.37596 1.39608 1.49080 2.46484 3.21328 3.28515 3.88958 4.03658 4.32846 4.42233 4.47486 4.55504 4.61094 4.63643 4.72227 4.91290 4.93731 5.02122 5.04744 5.13134 5.24673 5.40903 5.45245 5.54541 5.74750 5.82613 5.92550 6.48124 6.71310 7.11256 7.55948 9.08446 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.036968 B = 0.017428 C = 0.014723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.234837 B = 1606.254788 C = 1901.290210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.023 3.977 4 H 0.031 0.969 5 C -0.465 4.465 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.963 5.963 9 Si 0.927 3.073 10 H -0.270 1.270 11 H -0.299 1.299 12 H -0.246 1.246 13 C 0.045 3.955 14 H 0.084 0.916 15 C -0.140 4.140 16 C 0.006 3.994 17 N -0.491 5.491 18 C -0.006 4.006 19 H 0.063 0.937 20 H 0.047 0.953 21 H 0.059 0.941 22 H 0.029 0.971 23 H 0.044 0.956 24 H 0.257 0.743 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.006 1.724 6.190 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.004 3.996 4 H 0.049 0.951 5 C -0.504 4.504 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.606 5.606 9 Si 0.753 3.247 10 H -0.196 1.196 11 H -0.226 1.226 12 H -0.169 1.169 13 C -0.063 4.063 14 H 0.102 0.898 15 C -0.177 4.177 16 C -0.123 4.123 17 N -0.214 5.214 18 C -0.155 4.155 19 H 0.082 0.918 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.233 1.456 5.937 12.788 hybrid contribution -0.389 0.192 -0.656 0.786 sum -11.622 1.649 5.281 12.872 Atomic orbital electron populations 1.21837 0.95168 1.01583 1.01619 1.21665 0.95316 0.98581 0.99640 1.19099 0.94507 0.92827 0.93213 0.95122 1.21295 0.91524 1.44394 0.93193 0.93005 1.25888 0.95687 0.96337 1.01623 1.70080 1.11984 1.54680 1.23879 0.86027 0.80236 0.79223 0.79178 1.19574 1.22619 1.16939 1.23530 0.93708 0.95220 0.93881 0.89816 1.23269 1.01199 0.96368 0.96910 1.23868 1.00891 0.91039 0.96506 1.68637 1.41843 1.03915 1.06994 1.22844 0.98933 0.97923 0.95805 0.91836 0.93346 0.92215 0.95197 0.93734 0.93459 0.91777 0.89720 0.90797 0.89472 0.92465 0.91769 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.73 71.98 0.70 -3.77 16 2 C -0.11 -4.65 5.38 30.60 0.16 -4.48 16 3 C 0.02 1.03 1.56 -11.54 -0.02 1.01 16 4 H 0.03 1.39 5.29 -2.39 -0.01 1.38 16 5 C -0.47 -26.37 7.79 25.60 0.20 -26.17 16 6 H 0.05 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.10 5.47 84.65 0.46 0.37 16 8 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 9 Si 0.93 45.21 26.99 68.60 1.85 47.07 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.25 -11.01 6.82 99.48 0.68 -10.34 16 13 C 0.05 1.71 3.00 45.02 0.14 1.85 16 14 H 0.08 2.68 6.10 -2.39 -0.01 2.66 16 15 C -0.14 -4.96 7.67 31.24 0.24 -4.72 16 16 C 0.01 0.18 7.96 86.40 0.69 0.87 16 17 N -0.49 -19.10 4.78 -909.95 -4.35 -23.46 16 18 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 19 H 0.06 1.73 6.40 -2.39 -0.02 1.71 16 20 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.04 1.84 7.22 -2.39 -0.02 1.82 16 24 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.06 2.76 7.60 -2.38 -0.02 2.74 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.09 2.21 7.62 -2.39 -0.02 2.19 16 29 H 0.06 1.86 7.22 -2.39 -0.02 1.84 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.18 7.62 -2.39 -0.02 1.16 16 Total: -1.00 -66.56 244.28 2.66 -63.91 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.05 Total: 8.47 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 3.80 Total: -34.02 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -4.05 Total: -85.42 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.85 Total: 47.07 kcal Total: -66.56 2.66 -63.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds