Wall clock time and date at job start Thu Apr 9 2020 13:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 C 1.53003 * 109.47030 * 120.00143 * 2 1 3 5 5 H 1.08994 * 110.64742 * 296.84819 * 4 2 1 6 6 C 1.54944 * 110.87405 * 173.58813 * 4 2 1 7 7 N 1.48527 * 103.22413 * 204.15512 * 6 4 2 8 8 C 1.48130 * 105.82643 * 39.26847 * 7 6 4 9 9 C 1.53993 * 106.94170 * 334.58453 * 8 7 6 10 10 H 1.08997 * 110.30754 * 120.26820 * 9 8 7 11 11 C 1.50701 * 110.31529 * 242.33803 * 9 8 7 12 12 H 1.08002 * 119.99761 * 117.20612 * 11 9 8 13 13 C 1.37871 * 119.99694 * 297.49175 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 H 1.08998 * 109.46791 * 300.00121 * 1 2 3 20 20 H 1.08999 * 109.46977 * 59.99856 * 1 2 3 21 21 H 1.09000 * 109.46841 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46791 * 239.99879 * 2 1 3 23 23 H 1.08998 * 109.47441 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.46839 * 300.00351 * 3 2 1 25 25 H 1.09001 * 109.46779 * 60.00076 * 3 2 1 26 26 H 1.08995 * 110.66560 * 322.58924 * 6 4 2 27 27 H 1.08990 * 110.66391 * 85.55483 * 6 4 2 28 28 H 1.00893 * 111.00504 * 278.69440 * 7 6 4 29 29 H 1.09003 * 109.95003 * 215.29186 * 8 7 6 30 30 H 1.08996 * 109.99996 * 93.92005 * 8 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7339 -0.1912 2.1510 6 6 3.5805 -0.8818 1.2039 7 7 3.8264 -2.0507 2.0866 8 6 2.7311 -3.0073 1.8048 9 6 1.5408 -2.1842 1.2785 10 1 1.2689 -2.5112 0.2750 11 6 0.3618 -2.3159 2.2079 12 1 -0.0233 -1.4455 2.7183 13 6 -0.2213 -3.5486 2.4111 14 7 0.2476 -4.6085 1.7896 15 14 -1.6778 -3.7133 3.5691 16 1 -2.9388 -3.5188 2.8093 17 1 -1.6728 -5.0661 4.1816 18 1 -1.5799 -2.6860 4.6369 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8899 25 1 1.6768 1.9562 0.8900 26 1 3.9158 -1.0897 0.1879 27 1 4.0717 0.0090 1.5951 28 1 3.8274 -1.7768 3.0576 29 1 2.4471 -3.5275 2.7197 30 1 3.0487 -3.7258 1.0493 31 1 -0.1624 -5.4758 1.9328 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:19 Heat of formation + Delta-G solvation = -23.787900 kcal Electronic energy + Delta-G solvation = -11748.046072 eV Core-core repulsion = 9835.202774 eV Total energy + Delta-G solvation = -1912.843297 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.20224 -34.07152 -32.64636 -28.73118 -27.29365 -26.25835 -24.21993 -21.14600 -20.09028 -18.58089 -16.32374 -15.26214 -14.37094 -14.22454 -14.09321 -12.61241 -12.47582 -12.39825 -11.97986 -11.73595 -11.50066 -11.19416 -10.82724 -10.67822 -10.55490 -10.36522 -10.07442 -9.84819 -9.51195 -9.01273 -8.84281 -8.49537 -7.55341 -6.01941 -4.04013 3.29062 3.36532 3.38996 4.42850 5.25056 5.32908 5.48143 5.62254 5.65199 5.94845 6.05569 6.19795 6.31480 6.35370 6.39723 6.55608 6.60884 6.73626 6.87344 6.95211 7.04299 7.20373 7.29065 7.53070 7.78917 7.84968 8.03696 8.22339 8.51861 8.99062 9.59085 11.07395 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.015253 C = 0.012306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.316501 B = 1835.237467 C = 2274.711698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.113 4.113 5 H 0.062 0.938 6 C 0.046 3.954 7 N -0.690 5.690 8 C 0.064 3.936 9 C 0.032 3.968 10 H 0.032 0.968 11 C -0.507 4.507 12 H 0.053 0.947 13 C 0.060 3.940 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.046 0.954 20 H 0.033 0.967 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.324 0.676 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 7.266 -1.533 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.133 4.133 5 H 0.081 0.919 6 C -0.084 4.084 7 N -0.315 5.315 8 C -0.065 4.065 9 C 0.012 3.988 10 H 0.050 0.950 11 C -0.545 4.545 12 H 0.072 0.928 13 C -0.141 4.141 14 N -0.527 5.527 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 H 0.065 0.935 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.850 6.713 -1.951 7.550 hybrid contribution -1.703 0.209 1.066 2.020 sum 1.147 6.923 -0.886 7.073 Atomic orbital electron populations 1.21788 0.95199 1.03246 0.99427 1.20970 0.96101 0.94502 0.98162 1.21875 1.00403 0.97211 1.00691 1.22875 0.94750 0.99132 0.96591 0.91928 1.23065 0.95029 0.92526 0.97776 1.62973 1.47508 1.12638 1.08429 1.22799 0.88589 0.94263 1.00855 1.19854 0.93614 0.87999 0.97292 0.95012 1.21160 1.13812 0.93501 1.26036 0.92832 1.24985 0.97013 0.96105 0.96012 1.69969 1.41107 0.99177 1.42463 0.86680 0.83261 0.77294 0.81277 1.20762 1.21312 1.20048 0.93491 0.94805 0.90629 0.92189 0.93231 0.93699 0.93280 0.91659 0.92880 0.86292 0.91657 0.93288 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.66 37.16 0.32 -2.24 16 2 C -0.08 -1.40 2.33 -90.62 -0.21 -1.61 16 3 C -0.14 -2.13 9.04 37.16 0.34 -1.79 16 4 C -0.11 -2.29 2.14 -88.75 -0.19 -2.48 16 5 H 0.06 1.32 7.69 -51.93 -0.40 0.92 16 6 C 0.05 0.86 6.18 -1.90 -0.01 0.85 16 7 N -0.69 -14.22 7.51 -109.92 -0.83 -15.04 16 8 C 0.06 1.54 6.38 -2.63 -0.02 1.52 16 9 C 0.03 0.78 1.75 -90.41 -0.16 0.62 16 10 H 0.03 0.85 7.52 -51.93 -0.39 0.46 16 11 C -0.51 -13.46 7.34 -34.44 -0.25 -13.72 16 12 H 0.05 1.43 7.56 -52.49 -0.40 1.03 16 13 C 0.06 1.65 5.08 -17.82 -0.09 1.56 16 14 N -0.89 -25.32 12.41 55.43 0.69 -24.63 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.07 1.61 6.53 -51.93 -0.34 1.27 16 22 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 23 H 0.05 0.68 7.43 -51.93 -0.39 0.29 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.21 8.03 -51.93 -0.42 0.80 16 27 H 0.05 0.87 8.05 -51.93 -0.42 0.45 16 28 H 0.32 6.27 8.92 -39.30 -0.35 5.92 16 29 H 0.06 1.71 7.20 -51.93 -0.37 1.34 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 245.75 15.07 3.70 3.70 Total: -1.00 -27.34 245.75 -6.87 -34.21 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.14 Total: 2.91 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.27 Total: -17.29 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.14 Total: -39.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.34 -6.87 -34.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.423 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds