Wall clock time and date at job start Thu Apr 9 2020 13:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 C 1.53003 * 109.47030 * 120.00143 * 2 1 3 5 5 H 1.08994 * 110.64742 * 296.84819 * 4 2 1 6 6 C 1.54944 * 110.87405 * 173.58813 * 4 2 1 7 7 N 1.48527 * 103.22413 * 204.15512 * 6 4 2 8 8 C 1.48130 * 105.82643 * 39.26847 * 7 6 4 9 9 C 1.53993 * 106.94170 * 334.58453 * 8 7 6 10 10 H 1.08997 * 110.30754 * 120.26820 * 9 8 7 11 11 C 1.50701 * 110.31529 * 242.33803 * 9 8 7 12 12 H 1.08002 * 119.99761 * 117.20612 * 11 9 8 13 13 C 1.37871 * 119.99694 * 297.49175 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 H 1.08998 * 109.46791 * 300.00121 * 1 2 3 20 20 H 1.08999 * 109.46977 * 59.99856 * 1 2 3 21 21 H 1.09000 * 109.46841 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46791 * 239.99879 * 2 1 3 23 23 H 1.08998 * 109.47441 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.46839 * 300.00351 * 3 2 1 25 25 H 1.09001 * 109.46779 * 60.00076 * 3 2 1 26 26 H 1.08995 * 110.66560 * 322.58924 * 6 4 2 27 27 H 1.08990 * 110.66391 * 85.55483 * 6 4 2 28 28 H 1.00893 * 111.00504 * 278.69440 * 7 6 4 29 29 H 1.09003 * 109.95003 * 215.29186 * 8 7 6 30 30 H 1.08996 * 109.99996 * 93.92005 * 8 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7339 -0.1912 2.1510 6 6 3.5805 -0.8818 1.2039 7 7 3.8264 -2.0507 2.0866 8 6 2.7311 -3.0073 1.8048 9 6 1.5408 -2.1842 1.2785 10 1 1.2689 -2.5112 0.2750 11 6 0.3618 -2.3159 2.2079 12 1 -0.0233 -1.4455 2.7183 13 6 -0.2213 -3.5486 2.4111 14 7 0.2476 -4.6085 1.7896 15 14 -1.6778 -3.7133 3.5691 16 1 -2.9388 -3.5188 2.8093 17 1 -1.6728 -5.0661 4.1816 18 1 -1.5799 -2.6860 4.6369 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8899 25 1 1.6768 1.9562 0.8900 26 1 3.9158 -1.0897 0.1879 27 1 4.0717 0.0090 1.5951 28 1 3.8274 -1.7768 3.0576 29 1 2.4471 -3.5275 2.7197 30 1 3.0487 -3.7258 1.0493 31 1 -0.1624 -5.4758 1.9328 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:19 Heat of formation + Delta-G solvation = -41.660803 kcal Electronic energy + Delta-G solvation = -11748.821099 eV Core-core repulsion = 9835.202774 eV Total energy + Delta-G solvation = -1913.618325 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90178 -35.61147 -34.67974 -30.60138 -28.94266 -27.63500 -26.24745 -22.71884 -21.86126 -20.26149 -18.32876 -17.14141 -16.23082 -15.85709 -15.60554 -14.41621 -14.17049 -13.95988 -13.57575 -13.36188 -13.00445 -12.88186 -12.61161 -12.44422 -12.40732 -11.95043 -11.79346 -11.44238 -11.16066 -10.87222 -10.73180 -10.57977 -9.31452 -8.12376 -6.19982 1.38590 1.40245 1.49206 2.42077 3.18930 3.61882 4.02643 4.10729 4.26400 4.50376 4.64749 4.73915 4.84327 4.89519 4.93975 4.97577 5.14336 5.17159 5.28181 5.30775 5.38918 5.55205 5.64678 5.66842 5.77949 5.88210 6.12954 6.34303 6.67665 6.91545 7.46119 8.96755 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.015253 C = 0.012306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.316501 B = 1835.237467 C = 2274.711698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.136 4.136 4 C -0.105 4.105 5 H 0.056 0.944 6 C 0.051 3.949 7 N -0.685 5.685 8 C 0.077 3.923 9 C 0.029 3.971 10 H -0.003 1.003 11 C -0.511 4.511 12 H 0.051 0.949 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.948 3.052 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.268 1.268 19 H 0.044 0.956 20 H 0.059 0.941 21 H 0.035 0.965 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.334 0.666 29 H 0.037 0.963 30 H 0.027 0.973 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 9.206 -1.302 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.193 4.193 4 C -0.125 4.125 5 H 0.075 0.925 6 C -0.078 4.078 7 N -0.312 5.312 8 C -0.053 4.053 9 C 0.009 3.991 10 H 0.016 0.984 11 C -0.550 4.550 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.774 3.226 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.193 1.193 19 H 0.064 0.936 20 H 0.078 0.922 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.148 0.852 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.173 8.674 -1.715 9.394 hybrid contribution -1.791 -0.391 0.967 2.073 sum 1.381 8.284 -0.748 8.432 Atomic orbital electron populations 1.21717 0.95892 1.00987 1.00621 1.20966 0.95542 0.96658 0.96572 1.21786 1.01262 0.94429 1.01837 1.22754 0.95847 0.96272 0.97635 0.92546 1.23135 0.93953 0.92883 0.97827 1.62890 1.45577 1.13156 1.09557 1.22452 0.89586 0.94544 0.98706 1.19793 0.93305 0.91157 0.94834 0.98447 1.21412 1.14349 0.93292 1.25905 0.93121 1.25720 0.99562 0.95955 0.97543 1.70093 1.42476 0.99522 1.43943 0.85713 0.80178 0.77246 0.79482 1.20389 1.21230 1.19261 0.93649 0.92222 0.94542 0.92675 0.91810 0.91847 0.92898 0.91306 0.89354 0.85181 0.94396 0.95420 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 8.66 71.98 0.62 -4.21 16 2 C -0.08 -2.66 2.33 -10.79 -0.03 -2.68 16 3 C -0.14 -3.48 9.04 71.98 0.65 -2.83 16 4 C -0.11 -4.11 2.14 -9.58 -0.02 -4.14 16 5 H 0.06 2.29 7.69 -2.39 -0.02 2.27 16 6 C 0.05 1.79 6.18 86.65 0.54 2.33 16 7 N -0.69 -27.43 7.51 -501.67 -3.77 -31.20 16 8 C 0.08 3.78 6.38 86.40 0.55 4.33 16 9 C 0.03 1.44 1.75 -10.66 -0.02 1.42 16 10 H 0.00 -0.15 7.52 -2.39 -0.02 -0.17 16 11 C -0.51 -27.57 7.34 25.60 0.19 -27.38 16 12 H 0.05 2.71 7.56 -2.91 -0.02 2.68 16 13 C 0.01 0.59 5.08 84.65 0.43 1.02 16 14 N -0.92 -53.90 12.41 21.45 0.27 -53.64 16 15 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.04 1.57 6.53 -2.39 -0.02 1.55 16 22 H 0.05 1.92 8.11 -2.39 -0.02 1.90 16 23 H 0.06 1.47 7.43 -2.39 -0.02 1.45 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 2.38 8.03 -2.39 -0.02 2.36 16 27 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 28 H 0.33 12.37 8.92 -89.70 -0.80 11.57 16 29 H 0.04 2.04 7.20 -2.39 -0.02 2.02 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -59.10 245.75 1.72 -57.37 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.29 Total: 13.79 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 2.91 Total: -32.14 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.50 Total: -84.84 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -59.10 1.72 -57.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.711 kcal (2) G-P(sol) polarization free energy of solvation -59.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds