Wall clock time and date at job start Thu Apr 9 2020 13:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46928 * 2 1 4 4 C 1.53002 * 109.47130 * 120.00255 * 2 1 3 5 5 H 1.09002 * 110.62955 * 299.29701 * 4 2 1 6 6 C 1.55134 * 110.70394 * 176.19434 * 4 2 1 7 7 C 1.54912 * 101.65321 * 205.79133 * 6 4 2 8 8 N 1.47841 * 104.79657 * 37.06803 * 7 6 4 9 9 C 1.47442 * 108.56483 * 335.90653 * 8 7 6 10 10 H 1.09006 * 109.88981 * 120.39803 * 9 8 7 11 11 C 1.50703 * 109.89017 * 241.58000 * 9 8 7 12 12 H 1.08003 * 119.99841 * 117.77112 * 11 9 8 13 13 C 1.37876 * 120.00176 * 297.77867 * 11 9 8 14 14 N 1.31515 * 120.00133 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99927 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47241 * 59.99694 * 15 13 11 17 17 H 1.48507 * 109.47156 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46909 * 299.99171 * 15 13 11 19 19 H 1.09003 * 109.47332 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47279 * 299.99391 * 1 2 3 21 21 H 1.08999 * 109.47651 * 60.00052 * 1 2 3 22 22 H 1.09004 * 109.46728 * 240.00079 * 2 1 3 23 23 H 1.09004 * 109.46834 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47245 * 300.00075 * 3 2 1 25 25 H 1.09004 * 109.46884 * 60.00715 * 3 2 1 26 26 H 1.09004 * 110.99470 * 323.88042 * 6 4 2 27 27 H 1.09002 * 110.99587 * 87.66122 * 6 4 2 28 28 H 1.08994 * 110.37685 * 155.90129 * 7 6 4 29 29 H 1.09005 * 110.37093 * 278.23648 * 7 6 4 30 30 H 1.00901 * 110.99683 * 213.63919 * 8 7 6 31 31 H 0.96993 * 120.00643 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6974 -0.2151 2.1517 6 6 3.5879 -0.8219 1.2309 7 6 3.8305 -2.0749 2.1089 8 7 2.7237 -2.9942 1.7690 9 6 1.5955 -2.1991 1.2503 10 1 1.3551 -2.5147 0.2351 11 6 0.3933 -2.3722 2.1424 12 1 -0.0209 -1.5206 2.6617 13 6 -0.1778 -3.6178 2.2957 14 7 0.3264 -4.6547 1.6631 15 14 -1.6676 -3.8324 3.4020 16 1 -2.7810 -2.9863 2.9026 17 1 -2.0876 -5.2568 3.3958 18 1 -1.3186 -3.4249 4.7867 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 1.8932 -0.5139 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.9572 -0.9781 0.2172 27 1 4.0421 0.0625 1.6777 28 1 4.7903 -2.5298 1.8643 29 1 3.7933 -1.8106 3.1658 30 1 2.4445 -3.5367 2.5726 31 1 -0.0755 -5.5309 1.7706 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260631124.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:10 Heat of formation + Delta-G solvation = -23.190725 kcal Electronic energy + Delta-G solvation = -11753.484985 eV Core-core repulsion = 9840.667583 eV Total energy + Delta-G solvation = -1912.817402 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.05736 -34.02175 -32.43946 -28.60496 -27.70503 -26.25687 -24.21892 -20.72958 -19.99253 -18.75619 -16.52276 -14.95909 -14.43764 -14.14120 -13.91300 -12.75903 -12.41464 -12.01205 -11.92522 -11.69450 -11.50554 -11.35923 -10.85109 -10.64770 -10.37733 -10.33522 -10.30908 -9.74287 -9.64291 -9.51243 -8.88729 -8.47613 -6.79633 -5.95141 -4.08269 3.30785 3.36593 3.38710 4.42898 5.24786 5.47560 5.52718 5.61354 5.74538 5.90459 6.01391 6.21809 6.29065 6.34530 6.40205 6.44104 6.53128 6.60047 6.79625 6.83317 6.89573 6.97712 7.20204 7.23143 7.82772 8.01021 8.20030 8.54315 9.04325 9.17340 9.58637 11.07106 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.041104 B = 0.015359 C = 0.012335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.038958 B = 1822.578099 C = 2269.448053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.097 4.097 5 H 0.062 0.938 6 C -0.125 4.125 7 C 0.043 3.957 8 N -0.672 5.672 9 C 0.214 3.786 10 H 0.042 0.958 11 C -0.542 4.542 12 H 0.054 0.946 13 C 0.070 3.930 14 N -0.869 5.869 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.279 1.279 19 H 0.076 0.924 20 H 0.045 0.955 21 H 0.034 0.966 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.020 0.980 30 H 0.343 0.657 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 7.260 -1.007 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.201 4.201 4 C -0.117 4.117 5 H 0.080 0.920 6 C -0.163 4.163 7 C -0.087 4.087 8 N -0.303 5.303 9 C 0.107 3.893 10 H 0.060 0.940 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.134 4.134 14 N -0.506 5.506 15 Si 0.712 3.288 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 H 0.095 0.905 20 H 0.065 0.935 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.160 0.840 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.925 6.848 -1.682 7.635 hybrid contribution -1.194 0.255 1.515 1.945 sum 1.731 7.103 -0.168 7.313 Atomic orbital electron populations 1.21793 0.95176 1.03347 0.99443 1.20984 0.96058 0.94495 0.98253 1.21868 1.00406 0.97221 1.00621 1.22560 0.93102 0.99477 0.96510 0.91990 1.22718 0.97183 0.96816 0.99555 1.22719 0.96781 0.93217 0.95999 1.62231 1.08390 1.22888 1.36763 1.19726 0.88072 0.84920 0.96581 0.94032 1.21540 1.13898 0.93957 1.28766 0.92811 1.25063 0.96610 0.96292 0.95480 1.70036 1.39960 0.99515 1.41060 0.86802 0.83692 0.77008 0.81311 1.20280 1.21319 1.20418 0.90493 0.93540 0.94721 0.92038 0.93277 0.93713 0.93330 0.92015 0.93074 0.93015 0.96154 0.83984 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.70 37.16 0.32 -2.28 16 2 C -0.08 -1.45 2.30 -90.62 -0.21 -1.65 16 3 C -0.14 -2.17 9.01 37.16 0.33 -1.84 16 4 C -0.10 -2.01 2.01 -88.80 -0.18 -2.19 16 5 H 0.06 1.35 7.66 -51.93 -0.40 0.95 16 6 C -0.12 -2.34 5.56 -24.59 -0.14 -2.48 16 7 C 0.04 0.88 7.57 -2.30 -0.02 0.86 16 8 N -0.67 -16.58 7.03 -105.03 -0.74 -17.32 16 9 C 0.21 5.35 2.25 -67.88 -0.15 5.20 16 10 H 0.04 1.17 7.63 -51.93 -0.40 0.77 16 11 C -0.54 -14.52 7.29 -34.44 -0.25 -14.77 16 12 H 0.05 1.44 7.53 -52.48 -0.39 1.04 16 13 C 0.07 1.91 5.09 -17.82 -0.09 1.82 16 14 N -0.87 -24.84 12.57 55.43 0.70 -24.14 16 15 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H 0.08 1.65 6.61 -51.93 -0.34 1.31 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.05 0.70 7.37 -51.93 -0.38 0.31 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 27 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.34 9.03 7.48 -39.29 -0.29 8.74 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 245.99 15.07 3.71 3.71 Total: -1.00 -27.58 245.99 -6.88 -34.46 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.14 Total: 4.63 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -0.38 Total: -17.33 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.04 Total: -41.46 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.58 -6.88 -34.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260631124.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.266 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds