Wall clock time and date at job start Thu Apr 9 2020 13:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.54126 * 2 1 4 4 C 1.54891 * 110.48608 * 237.39286 * 2 1 3 5 5 C 1.54885 * 102.74923 * 203.37743 * 4 2 1 6 6 C 1.54272 * 104.19380 * 37.94423 * 5 4 2 7 7 C 1.50702 * 110.03304 * 95.67504 * 6 5 4 8 8 H 1.08002 * 119.99648 * 4.82631 * 7 6 5 9 9 C 1.37871 * 119.99433 * 184.82587 * 7 6 5 10 10 N 1.31505 * 120.00640 * 2.82986 * 9 7 6 11 11 Si 1.86809 * 119.99530 * 182.82681 * 9 7 6 12 12 H 1.48496 * 109.47180 * 60.00270 * 11 9 7 13 13 H 1.48500 * 109.47187 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47139 * 300.00058 * 11 9 7 15 15 C 1.53004 * 110.02724 * 217.10360 * 6 5 4 16 16 N 1.46903 * 109.47340 * 294.73783 * 15 6 5 17 17 C 1.53873 * 106.59894 * 336.38614 * 6 5 4 18 18 H 1.09003 * 109.47216 * 181.15557 * 1 2 3 19 19 H 1.08995 * 109.47252 * 301.15035 * 1 2 3 20 20 H 1.09001 * 109.47052 * 61.15686 * 1 2 3 21 21 H 1.09000 * 110.75486 * 321.69732 * 4 2 1 22 22 H 1.09001 * 110.75671 * 84.87666 * 4 2 1 23 23 H 1.09002 * 110.48750 * 156.61652 * 5 4 2 24 24 H 1.08996 * 110.48534 * 279.13147 * 5 4 2 25 25 H 0.97004 * 120.00706 * 179.97438 * 10 9 7 26 26 H 1.08997 * 109.46955 * 54.73905 * 15 6 5 27 27 H 1.08995 * 109.46631 * 174.73705 * 15 6 5 28 28 H 1.00897 * 110.99833 * 56.04509 * 16 15 6 29 29 H 1.00895 * 110.99545 * 180.02562 * 16 15 6 30 30 H 1.08991 * 110.03494 * 240.71878 * 17 6 5 31 31 H 1.08997 * 110.03161 * 119.28436 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7819 -1.2223 5 6 3.4907 -1.1978 -0.7602 6 6 3.3165 -1.5406 0.7339 7 6 3.1128 -3.0242 0.9029 8 1 3.1837 -3.6798 0.0475 9 6 2.8361 -3.5444 2.1493 10 7 2.6947 -2.7408 3.1807 11 14 2.6618 -5.3908 2.3731 12 1 3.9279 -6.0589 1.9786 13 1 2.3659 -5.6911 3.7970 14 1 1.5524 -5.8901 1.5215 15 6 4.5466 -1.0866 1.5225 16 7 5.7178 -1.8619 1.0921 17 6 2.0699 -0.7789 1.2172 18 1 -0.3634 -1.0275 0.0207 19 1 -0.3633 0.5316 0.8794 20 1 -0.3633 0.4958 -0.9002 21 1 1.4580 -1.6599 -1.4224 22 1 2.1220 -0.1389 -2.1010 23 1 3.8315 -2.0721 -1.3148 24 1 4.1902 -0.3713 -0.8850 25 1 2.4996 -3.1068 4.0576 26 1 4.7249 -0.0271 1.3393 27 1 4.3754 -1.2476 2.5868 28 1 5.8591 -1.7807 0.0963 29 1 6.5436 -1.5808 1.5990 30 1 2.3412 -0.0860 2.0135 31 1 1.3176 -1.4823 1.5739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260926200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:23 Heat of formation + Delta-G solvation = -21.955076 kcal Electronic energy + Delta-G solvation = -11904.236374 eV Core-core repulsion = 9991.472553 eV Total energy + Delta-G solvation = -1912.763820 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.94058 -33.63882 -31.87278 -29.78187 -27.69174 -25.09343 -23.76493 -22.06774 -19.06473 -18.26169 -15.86174 -14.72754 -14.61229 -14.26084 -13.45914 -12.85271 -12.67348 -12.17305 -11.93132 -11.73948 -11.22689 -10.87034 -10.73446 -10.33969 -10.19311 -9.86423 -9.63898 -9.50401 -9.28099 -8.90359 -8.64668 -8.12148 -7.33494 -5.78427 -3.78053 3.45129 3.48594 3.53436 4.62206 5.48288 5.61876 5.71609 5.78883 5.91178 6.14568 6.31010 6.37108 6.45494 6.59130 6.66839 6.77375 6.88302 6.93222 7.05440 7.09643 7.20153 7.43966 7.55092 7.85382 7.99572 8.19644 8.42928 8.59821 8.74067 9.16371 9.82775 11.28630 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.035851 B = 0.017796 C = 0.014617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.821633 B = 1573.050197 C = 1915.103432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 H 0.051 0.949 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.073 3.927 7 C -0.468 4.468 8 H 0.049 0.951 9 C 0.066 3.934 10 N -0.894 5.894 11 Si 0.885 3.115 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.283 1.283 15 C 0.081 3.919 16 N -0.828 5.828 17 C -0.079 4.079 18 H 0.054 0.946 19 H 0.045 0.955 20 H 0.038 0.962 21 H 0.062 0.938 22 H 0.040 0.960 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.255 0.745 26 H -0.024 1.024 27 H 0.088 0.912 28 H 0.320 0.680 29 H 0.313 0.687 30 H 0.034 0.966 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 4.374 -4.646 6.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 H 0.070 0.930 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.073 3.927 7 C -0.507 4.507 8 H 0.067 0.933 9 C -0.133 4.133 10 N -0.534 5.534 11 Si 0.714 3.286 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.209 1.209 15 C -0.049 4.049 16 N -0.354 5.354 17 C -0.118 4.118 18 H 0.073 0.927 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.065 0.935 26 H -0.006 1.006 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.053 0.947 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.738 3.721 -4.163 5.633 hybrid contribution 0.354 -0.072 -0.040 0.363 sum -0.385 3.649 -4.204 5.580 Atomic orbital electron populations 1.21756 0.96522 1.01380 0.99752 1.22091 0.94298 0.98230 0.97822 0.93001 1.22418 0.97713 0.98779 0.95863 1.22485 0.94765 0.98250 0.99687 1.18728 0.90337 0.95553 0.88106 1.20834 1.45716 0.90827 0.93276 0.93316 1.24788 0.95566 0.96821 0.96170 1.69899 1.50092 1.33758 0.99666 0.86783 0.78188 0.87087 0.76509 1.20483 1.21805 1.20878 1.21986 0.91008 0.89031 1.02908 1.58602 1.05589 1.63205 1.08017 1.22100 0.99358 0.96897 0.93419 0.92659 0.93596 0.94270 0.91885 0.94156 0.92807 0.94835 0.93533 1.00624 0.89390 0.86830 0.87736 0.94687 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.12 37.16 0.34 -2.01 16 2 C -0.11 -2.06 3.46 -88.96 -0.31 -2.37 16 3 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -2.11 6.33 -24.74 -0.16 -2.26 16 5 C -0.11 -2.38 4.98 -25.07 -0.12 -2.51 16 6 C 0.07 1.76 0.43 -154.54 -0.07 1.69 16 7 C -0.47 -12.64 7.38 -34.44 -0.25 -12.89 16 8 H 0.05 1.35 7.50 -52.49 -0.39 0.95 16 9 C 0.07 1.83 4.92 -17.83 -0.09 1.74 16 10 N -0.89 -25.21 10.38 55.43 0.58 -24.63 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.08 1.91 5.18 -3.82 -0.02 1.89 16 16 N -0.83 -17.75 9.11 -10.37 -0.09 -17.84 16 17 C -0.08 -1.85 4.65 -25.61 -0.12 -1.97 16 18 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 19 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 1.14 7.63 -51.93 -0.40 0.74 16 24 H 0.03 0.65 7.81 -51.93 -0.41 0.25 16 25 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 26 H -0.02 -0.54 8.07 -51.93 -0.42 -0.96 16 27 H 0.09 2.34 6.60 -51.93 -0.34 2.00 16 28 H 0.32 6.32 8.12 -39.29 -0.32 6.01 16 29 H 0.31 5.86 9.08 -39.29 -0.36 5.51 16 30 H 0.03 0.84 7.67 -51.93 -0.40 0.44 16 31 H 0.07 1.91 6.52 -51.93 -0.34 1.57 16 LS Contribution 242.84 15.07 3.66 3.66 Total: -1.00 -27.98 242.84 -6.71 -34.69 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.04 Total: 5.87 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -0.80 Total: -18.69 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.48 Total: -42.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.98 -6.71 -34.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.733 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds