Wall clock time and date at job start Thu Apr 9 2020 13:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46870 * 2 1 4 4 H 1.09001 * 109.51941 * 304.86698 * 3 2 1 5 5 C 1.53114 * 109.52783 * 64.99937 * 3 2 1 6 6 C 1.53032 * 109.28141 * 177.55676 * 5 3 2 7 7 N 1.46844 * 109.52527 * 300.82107 * 6 5 3 8 8 C 1.46846 * 111.19783 * 61.73901 * 7 6 5 9 9 C 1.53035 * 109.52744 * 298.26158 * 8 7 6 10 10 H 1.08995 * 109.50534 * 179.12351 * 9 8 7 11 11 C 1.50706 * 109.49899 * 299.23539 * 9 8 7 12 12 H 1.08006 * 119.99562 * 119.99661 * 11 9 8 13 13 C 1.37875 * 120.00307 * 300.00129 * 11 9 8 14 14 N 1.31516 * 119.99876 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00074 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46880 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47249 * 119.99699 * 15 13 11 18 18 H 1.48503 * 109.46663 * 239.99896 * 15 13 11 19 19 H 1.08995 * 109.46902 * 59.99825 * 1 2 3 20 20 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47316 * 300.00325 * 1 2 3 22 22 H 1.09000 * 109.47316 * 239.99675 * 2 1 3 23 23 H 1.09002 * 109.47345 * 119.99429 * 2 1 3 24 24 H 1.09000 * 109.50493 * 57.61670 * 5 3 2 25 25 H 1.09000 * 109.53426 * 297.52073 * 5 3 2 26 26 H 1.09000 * 109.46311 * 180.80335 * 6 5 3 27 27 H 1.08998 * 109.46309 * 60.83577 * 6 5 3 28 28 H 1.00904 * 110.99961 * 297.64368 * 7 6 5 29 29 H 1.09008 * 109.46456 * 58.27625 * 8 7 6 30 30 H 1.09003 * 109.46474 * 178.24130 * 8 7 6 31 31 H 0.97000 * 120.00037 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6076 1.9817 -0.8429 5 6 1.6355 2.1284 1.3079 6 6 2.2002 3.5505 1.3283 7 7 3.6633 3.4994 1.2137 8 6 4.0753 2.8875 -0.0560 9 6 3.5666 1.4455 -0.1179 10 1 3.8593 0.9968 -1.0671 11 6 4.1606 0.6534 1.0183 12 1 3.5144 0.1909 1.7498 13 6 5.5287 0.5193 1.1241 14 7 6.3154 1.0822 0.2332 15 14 6.2648 -0.4632 2.5321 16 1 5.1741 -0.9908 3.3908 17 1 7.0564 -1.5945 1.9857 18 1 7.1489 0.4153 3.3395 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 2.0346 1.5662 2.1521 25 1 0.5485 2.1673 1.3779 26 1 1.9260 4.0367 2.2646 27 1 1.7900 4.1162 0.4918 28 1 4.0707 3.0131 1.9984 29 1 3.6563 3.4563 -0.8862 30 1 5.1632 2.8922 -0.1253 31 1 7.2779 0.9875 0.3074 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983114.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:32 Heat of formation + Delta-G solvation = -42.769910 kcal Electronic energy + Delta-G solvation = -11928.406302 eV Core-core repulsion = 10014.739883 eV Total energy + Delta-G solvation = -1913.666419 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.97004 -35.09902 -34.66088 -31.22546 -30.28547 -26.88421 -25.00927 -23.23891 -21.86279 -20.67770 -17.93945 -16.81633 -16.28051 -15.50797 -15.09206 -15.02383 -14.46300 -14.39194 -13.78263 -13.02946 -12.89402 -12.70607 -12.66653 -12.44298 -12.33063 -11.82064 -11.72363 -11.63866 -11.28945 -10.79922 -10.59346 -10.31535 -8.85281 -8.04663 -6.15583 1.39807 1.43768 1.52438 2.44813 3.22951 3.87878 4.08434 4.19513 4.37023 4.47842 4.63494 4.76292 4.83445 4.89421 4.95106 5.11904 5.14680 5.18209 5.34777 5.37862 5.43896 5.53656 5.64113 5.68244 5.83696 6.07578 6.37164 6.63544 6.80078 6.98629 7.51393 9.00032 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037393 B = 0.016994 C = 0.014115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.616926 B = 1647.291753 C = 1983.255853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.074 4.074 4 H 0.045 0.955 5 C -0.132 4.132 6 C 0.058 3.942 7 N -0.684 5.684 8 C 0.070 3.930 9 C 0.014 3.986 10 H -0.014 1.014 11 C -0.502 4.502 12 H 0.055 0.945 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.283 1.283 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.336 0.664 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 0.689 2.074 9.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.093 4.093 4 H 0.064 0.936 5 C -0.170 4.170 6 C -0.072 4.072 7 N -0.313 5.313 8 C -0.060 4.060 9 C -0.006 4.006 10 H 0.004 0.996 11 C -0.540 4.540 12 H 0.073 0.927 13 C -0.183 4.183 14 N -0.557 5.557 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.209 1.209 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.521 1.371 1.794 8.816 hybrid contribution 0.750 -1.615 0.510 1.852 sum -7.771 -0.243 2.305 8.110 Atomic orbital electron populations 1.21778 0.94646 1.01625 1.01908 1.21399 0.95928 0.96501 1.00538 1.21102 0.95963 0.95471 0.96715 0.93646 1.22125 1.00172 0.97325 0.97422 1.22018 0.88332 0.95361 1.01500 1.60878 1.08566 1.56620 1.05190 1.21796 1.01089 0.93315 0.89834 1.19350 0.91790 0.94306 0.95164 0.99585 1.21342 0.91122 1.31132 1.10424 0.92688 1.25651 0.97998 0.96664 0.98026 1.70004 1.03835 1.45385 1.36464 0.85705 0.78466 0.78565 0.80090 1.19236 1.21496 1.20861 0.92634 0.92374 0.92120 0.94404 0.93300 0.93245 0.90970 0.90311 0.91917 0.84690 0.95278 0.91357 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.67 71.98 0.70 -3.30 16 2 C -0.11 -3.92 5.03 30.60 0.15 -3.77 16 3 C -0.07 -2.95 2.02 -10.71 -0.02 -2.97 16 4 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.13 -4.65 4.79 30.64 0.15 -4.51 16 6 C 0.06 2.04 6.55 86.32 0.57 2.60 16 7 N -0.68 -29.39 6.82 -514.02 -3.51 -32.90 16 8 C 0.07 3.37 5.85 86.33 0.50 3.87 16 9 C 0.01 0.67 2.17 -11.48 -0.02 0.65 16 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C -0.50 -26.13 6.16 25.60 0.16 -25.97 16 12 H 0.06 2.84 5.68 -2.91 -0.02 2.83 16 13 C 0.02 0.81 5.30 84.65 0.45 1.26 16 14 N -0.92 -52.33 11.32 21.45 0.24 -52.08 16 15 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.06 1.58 6.63 -2.39 -0.02 1.56 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.96 6.65 -2.39 -0.02 1.95 16 24 H 0.05 1.92 6.82 -2.39 -0.02 1.90 16 25 H 0.07 2.14 6.70 -2.39 -0.02 2.12 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.34 15.33 7.91 -89.69 -0.71 14.62 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.32 16 30 H 0.07 3.76 6.05 -2.39 -0.01 3.75 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -56.31 236.42 1.78 -54.53 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.39 Total: 17.46 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 2.63 Total: -32.13 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -3.26 Total: -84.98 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -56.31 1.78 -54.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983114.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.759 kcal (2) G-P(sol) polarization free energy of solvation -56.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds