Wall clock time and date at job start Thu Apr 9 2020 13:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 C 1.53000 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.28756 * 54.30076 * 4 3 2 6 6 C 1.54384 * 110.40928 * 292.11384 * 4 3 2 7 7 N 1.48558 * 104.59219 * 217.20659 * 6 4 3 8 8 C 1.48560 * 104.22153 * 39.48657 * 7 6 4 9 9 C 1.54262 * 110.32299 * 176.42730 * 4 3 2 10 10 H 1.09006 * 110.32211 * 237.89406 * 9 4 3 11 11 C 1.50704 * 110.32487 * 359.97438 * 9 4 3 12 12 H 1.08004 * 119.99735 * 5.37515 * 11 9 4 13 13 C 1.37872 * 120.00067 * 185.37650 * 11 9 4 14 14 N 1.31519 * 119.99888 * 9.14760 * 13 11 9 15 15 Si 1.86796 * 119.99968 * 189.14287 * 13 11 9 16 16 H 1.48496 * 109.46962 * 94.97708 * 15 13 11 17 17 H 1.48510 * 109.47166 * 214.97368 * 15 13 11 18 18 H 1.48500 * 109.47464 * 334.97433 * 15 13 11 19 19 H 1.08997 * 109.46680 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47118 * 300.00128 * 1 2 3 21 21 H 1.08997 * 109.46887 * 60.00385 * 1 2 3 22 22 H 1.09006 * 109.47246 * 240.00257 * 2 1 3 23 23 H 1.09002 * 109.47389 * 120.00119 * 2 1 3 24 24 H 1.09004 * 109.47284 * 59.99904 * 3 2 1 25 25 H 1.09002 * 109.47013 * 300.00349 * 3 2 1 26 26 H 1.08995 * 110.40739 * 335.98661 * 6 4 3 27 27 H 1.09002 * 110.40981 * 98.42781 * 6 4 3 28 28 H 1.00899 * 111.00363 * 279.92642 * 7 6 4 29 29 H 1.09009 * 110.41005 * 201.73758 * 8 7 6 30 30 H 1.09002 * 110.41492 * 79.29565 * 8 7 6 31 31 H 0.97001 * 119.99653 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9483 0.8458 -0.8293 6 6 4.1079 0.8980 1.3414 7 7 5.3114 1.7217 1.6241 8 6 4.9223 3.0926 1.2044 9 6 4.1059 2.8863 -0.0895 10 1 4.7472 2.9982 -0.9638 11 6 2.9624 3.8660 -0.1519 12 1 1.9460 3.5173 -0.0431 13 6 3.2139 5.2074 -0.3480 14 7 4.4265 5.6105 -0.6591 15 14 1.8323 6.4521 -0.1718 16 1 1.8440 7.0133 1.2030 17 1 2.0248 7.5479 -1.1554 18 1 0.5296 5.7848 -0.4229 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.3655 1.0267 2.1291 27 1 4.3808 -0.1527 1.2430 28 1 6.1062 1.3938 1.0961 29 1 5.8085 3.6944 1.0027 30 1 4.3074 3.5647 1.9707 31 1 4.6033 6.5542 -0.7974 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:36 Heat of formation + Delta-G solvation = -18.492454 kcal Electronic energy + Delta-G solvation = -11587.538385 eV Core-core repulsion = 9674.924715 eV Total energy + Delta-G solvation = -1912.613670 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.14678 -34.07149 -32.63159 -29.75464 -28.03139 -24.60990 -24.07911 -21.47012 -20.31814 -18.69595 -15.92834 -15.50985 -14.72376 -14.45365 -13.57967 -13.07478 -12.70171 -12.64816 -12.13058 -11.80081 -11.33851 -11.13323 -10.91086 -10.81490 -10.50416 -10.17599 -10.03512 -9.72781 -9.55644 -9.08665 -8.75147 -8.34307 -7.72641 -6.01801 -4.00343 3.31040 3.38687 3.40803 4.45186 5.25921 5.31916 5.42431 5.50379 5.64682 5.84112 5.94161 6.14987 6.23905 6.25253 6.35119 6.48182 6.54571 6.70754 6.76717 6.98218 7.03000 7.18584 7.24657 7.41544 7.63465 7.84064 7.96327 8.24972 8.47831 9.01816 9.62667 11.09223 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.032431 B = 0.015926 C = 0.011469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.176942 B = 1757.757278 C = 2440.859146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.091 4.091 4 C -0.118 4.118 5 H 0.047 0.953 6 C 0.048 3.952 7 N -0.687 5.687 8 C 0.056 3.944 9 C 0.021 3.979 10 H 0.033 0.967 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 H 0.043 0.957 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.321 0.679 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -7.739 1.351 8.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.065 0.935 6 C -0.082 4.082 7 N -0.312 5.312 8 C -0.073 4.073 9 C 0.001 3.999 10 H 0.051 0.949 11 C -0.554 4.554 12 H 0.090 0.910 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.199 1.199 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.339 -7.490 2.075 8.459 hybrid contribution -0.674 0.805 -0.991 1.444 sum -4.013 -6.685 1.084 7.872 Atomic orbital electron populations 1.21760 0.96816 1.00414 1.01708 1.21701 0.95060 0.99142 1.00867 1.21595 0.95198 0.93359 1.02674 1.22503 0.95840 0.99162 0.96274 0.93459 1.22989 0.93214 0.95468 0.96508 1.63486 1.05363 1.04915 1.57415 1.23145 0.98896 0.87647 0.97622 1.19978 0.95678 0.89689 0.94568 0.94865 1.21457 0.93412 0.91367 1.49155 0.91022 1.25027 0.95351 0.98699 0.94887 1.69989 1.20288 1.15464 1.47243 0.86686 0.82733 0.81381 0.77873 1.20737 1.21442 1.19882 0.93746 0.92975 0.92975 0.93024 0.92787 0.91843 0.91365 0.91313 0.93117 0.86623 0.92411 0.91603 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.13 -2.00 5.79 -26.73 -0.15 -2.16 16 3 C -0.09 -1.73 3.08 -26.73 -0.08 -1.81 16 4 C -0.12 -2.40 3.07 -89.23 -0.27 -2.67 16 5 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.05 0.90 6.21 -2.18 -0.01 0.89 16 7 N -0.69 -13.83 7.62 -109.66 -0.84 -14.66 16 8 C 0.06 1.32 6.74 -2.18 -0.01 1.31 16 9 C 0.02 0.51 2.82 -90.39 -0.26 0.26 16 10 H 0.03 0.91 8.06 -51.93 -0.42 0.49 16 11 C -0.52 -13.76 7.45 -34.44 -0.26 -14.02 16 12 H 0.07 1.86 4.80 -52.48 -0.25 1.61 16 13 C 0.06 1.71 5.32 -17.82 -0.09 1.61 16 14 N -0.89 -25.73 13.12 55.43 0.73 -25.00 16 15 Si 0.89 21.25 29.55 -169.99 -5.02 16.23 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.79 7.53 -51.93 -0.39 0.40 16 24 H 0.06 1.28 7.18 -51.93 -0.37 0.91 16 25 H 0.07 1.42 6.98 -51.93 -0.36 1.05 16 26 H 0.07 1.31 7.78 -51.93 -0.40 0.90 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.32 5.93 8.92 -39.29 -0.35 5.58 16 29 H 0.06 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.07 1.66 7.86 -51.93 -0.41 1.26 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 246.44 15.07 3.71 3.71 Total: -1.00 -27.70 246.44 -7.25 -34.95 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.05 Total: 3.05 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.78 Total: -18.28 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.11 Total: -39.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.70 -7.25 -34.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.460 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds