Wall clock time and date at job start Thu Apr 9 2020 13:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 C 1.53000 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.28756 * 54.30076 * 4 3 2 6 6 C 1.54384 * 110.40928 * 292.11384 * 4 3 2 7 7 N 1.48558 * 104.59219 * 217.20659 * 6 4 3 8 8 C 1.48560 * 104.22153 * 39.48657 * 7 6 4 9 9 C 1.54262 * 110.32299 * 176.42730 * 4 3 2 10 10 H 1.09006 * 110.32211 * 237.89406 * 9 4 3 11 11 C 1.50704 * 110.32487 * 359.97438 * 9 4 3 12 12 H 1.08004 * 119.99735 * 5.37515 * 11 9 4 13 13 C 1.37872 * 120.00067 * 185.37650 * 11 9 4 14 14 N 1.31519 * 119.99888 * 9.14760 * 13 11 9 15 15 Si 1.86796 * 119.99968 * 189.14287 * 13 11 9 16 16 H 1.48496 * 109.46962 * 94.97708 * 15 13 11 17 17 H 1.48510 * 109.47166 * 214.97368 * 15 13 11 18 18 H 1.48500 * 109.47464 * 334.97433 * 15 13 11 19 19 H 1.08997 * 109.46680 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47118 * 300.00128 * 1 2 3 21 21 H 1.08997 * 109.46887 * 60.00385 * 1 2 3 22 22 H 1.09006 * 109.47246 * 240.00257 * 2 1 3 23 23 H 1.09002 * 109.47389 * 120.00119 * 2 1 3 24 24 H 1.09004 * 109.47284 * 59.99904 * 3 2 1 25 25 H 1.09002 * 109.47013 * 300.00349 * 3 2 1 26 26 H 1.08995 * 110.40739 * 335.98661 * 6 4 3 27 27 H 1.09002 * 110.40981 * 98.42781 * 6 4 3 28 28 H 1.00899 * 111.00363 * 279.92642 * 7 6 4 29 29 H 1.09009 * 110.41005 * 201.73758 * 8 7 6 30 30 H 1.09002 * 110.41492 * 79.29565 * 8 7 6 31 31 H 0.97001 * 119.99653 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9483 0.8458 -0.8293 6 6 4.1079 0.8980 1.3414 7 7 5.3114 1.7217 1.6241 8 6 4.9223 3.0926 1.2044 9 6 4.1059 2.8863 -0.0895 10 1 4.7472 2.9982 -0.9638 11 6 2.9624 3.8660 -0.1519 12 1 1.9460 3.5173 -0.0431 13 6 3.2139 5.2074 -0.3480 14 7 4.4265 5.6105 -0.6591 15 14 1.8323 6.4521 -0.1718 16 1 1.8440 7.0133 1.2030 17 1 2.0248 7.5479 -1.1554 18 1 0.5296 5.7848 -0.4229 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.3655 1.0267 2.1291 27 1 4.3808 -0.1527 1.2430 28 1 6.1062 1.3938 1.0961 29 1 5.8085 3.6944 1.0027 30 1 4.3074 3.5647 1.9707 31 1 4.6033 6.5542 -0.7974 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:35 Heat of formation + Delta-G solvation = -36.534790 kcal Electronic energy + Delta-G solvation = -11588.320759 eV Core-core repulsion = 9674.924715 eV Total energy + Delta-G solvation = -1913.396044 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.86534 -35.47499 -34.68099 -31.37297 -29.81403 -26.25058 -25.94023 -22.99139 -21.89051 -20.53731 -17.87219 -17.26783 -16.42769 -16.09892 -15.19325 -14.61652 -14.49566 -14.19167 -13.76293 -13.51403 -12.86835 -12.83014 -12.54190 -12.42851 -12.35920 -11.69435 -11.61345 -11.42680 -11.23991 -10.84539 -10.72244 -10.40841 -9.45544 -8.13138 -6.16748 1.39459 1.41712 1.50556 2.43695 3.19423 3.61271 4.04047 4.18167 4.30209 4.43590 4.51125 4.60029 4.80434 4.89390 5.00600 5.04504 5.08651 5.15123 5.27441 5.32281 5.39327 5.50863 5.57495 5.70667 5.76438 5.87490 5.94938 6.42669 6.62017 6.93882 7.49295 8.98013 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.032431 B = 0.015926 C = 0.011469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.176942 B = 1757.757278 C = 2440.859146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.113 4.113 5 H 0.055 0.945 6 C 0.055 3.945 7 N -0.680 5.680 8 C 0.070 3.930 9 C 0.012 3.988 10 H -0.005 1.005 11 C -0.523 4.523 12 H 0.077 0.923 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.264 1.264 19 H 0.068 0.932 20 H 0.050 0.950 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.333 0.667 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -9.310 1.905 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.122 4.122 4 C -0.133 4.133 5 H 0.073 0.927 6 C -0.075 4.075 7 N -0.306 5.306 8 C -0.060 4.060 9 C -0.008 4.008 10 H 0.013 0.987 11 C -0.561 4.561 12 H 0.095 0.905 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.772 3.228 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.188 1.188 19 H 0.087 0.913 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.470 -9.083 2.631 10.460 hybrid contribution -0.292 1.255 -1.184 1.750 sum -4.762 -7.828 1.447 9.277 Atomic orbital electron populations 1.21751 0.95513 1.01922 1.01437 1.21613 0.96202 0.96196 1.01948 1.21453 0.94100 0.95897 1.00742 1.22447 0.96838 0.96306 0.97755 0.92671 1.23020 0.92357 0.96942 0.95160 1.63408 1.06516 1.03276 1.57400 1.22770 0.97406 0.89355 0.96473 1.19982 0.94897 0.92487 0.93430 0.98651 1.21862 0.94296 0.91972 1.48002 0.90478 1.25796 0.97465 1.00692 0.94935 1.70118 1.22205 1.15629 1.48700 0.85715 0.80334 0.79010 0.77705 1.20415 1.21455 1.18847 0.91346 0.93103 0.93494 0.92202 0.91352 0.93343 0.93732 0.91271 0.89506 0.85254 0.94553 0.93563 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.39 5.79 30.59 0.18 -3.21 16 3 C -0.08 -3.09 3.08 30.59 0.09 -3.00 16 4 C -0.11 -4.48 3.07 -9.90 -0.03 -4.51 16 5 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 6 C 0.05 1.90 6.21 86.45 0.54 2.44 16 7 N -0.68 -26.41 7.62 -500.85 -3.82 -30.23 16 8 C 0.07 3.34 6.74 86.45 0.58 3.93 16 9 C 0.01 0.61 2.82 -10.64 -0.03 0.58 16 10 H 0.00 -0.27 8.06 -2.38 -0.02 -0.29 16 11 C -0.52 -28.29 7.45 25.60 0.19 -28.10 16 12 H 0.08 4.01 4.80 -2.91 -0.01 4.00 16 13 C 0.01 0.51 5.32 84.65 0.45 0.97 16 14 N -0.93 -54.87 13.12 21.45 0.28 -54.59 16 15 Si 0.95 43.98 29.55 68.60 2.03 46.01 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 20 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.07 1.73 7.53 -2.39 -0.02 1.71 16 24 H 0.05 1.91 7.18 -2.39 -0.02 1.89 16 25 H 0.04 1.83 6.98 -2.39 -0.02 1.81 16 26 H 0.07 2.43 7.78 -2.39 -0.02 2.41 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.33 11.74 8.92 -89.69 -0.80 10.94 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.05 2.37 7.86 -2.39 -0.02 2.35 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -59.53 246.44 1.47 -58.06 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.29 Total: 14.61 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 2.69 Total: -33.85 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.54 Total: -84.82 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.53 1.47 -58.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.525 kcal (2) G-P(sol) polarization free energy of solvation -59.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds