Wall clock time and date at job start Thu Apr 9 2020 13:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.53001 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.27554 * 304.35727 * 4 3 2 6 6 C 1.53988 * 110.31478 * 66.45124 * 4 3 2 7 7 N 1.47899 * 107.06117 * 117.68992 * 6 4 3 8 8 C 1.48532 * 105.82069 * 25.33061 * 7 6 4 9 9 C 1.54603 * 110.30679 * 182.16953 * 4 3 2 10 10 H 1.09004 * 110.72063 * 337.48000 * 9 4 3 11 11 C 1.50697 * 110.72502 * 100.76241 * 9 4 3 12 12 H 1.08002 * 120.00095 * 5.19665 * 11 9 4 13 13 C 1.37882 * 120.00159 * 185.19080 * 11 9 4 14 14 N 1.31512 * 119.99396 * 6.07394 * 13 11 9 15 15 Si 1.86793 * 120.00220 * 186.07200 * 13 11 9 16 16 H 1.48498 * 109.47274 * 94.68196 * 15 13 11 17 17 H 1.48502 * 109.46950 * 214.67889 * 15 13 11 18 18 H 1.48505 * 109.47108 * 334.68083 * 15 13 11 19 19 H 1.09001 * 109.47338 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46709 * 300.00346 * 1 2 3 21 21 H 1.08994 * 109.46870 * 59.99732 * 1 2 3 22 22 H 1.08999 * 109.47008 * 239.99222 * 2 1 3 23 23 H 1.09005 * 109.46621 * 119.99820 * 2 1 3 24 24 H 1.09004 * 109.46698 * 299.99697 * 3 2 1 25 25 H 1.09001 * 109.47079 * 59.99965 * 3 2 1 26 26 H 1.09001 * 109.91920 * 237.04323 * 6 4 3 27 27 H 1.09009 * 109.91549 * 358.13756 * 6 4 3 28 28 H 1.00892 * 111.00159 * 145.84855 * 7 6 4 29 29 H 1.09002 * 110.66721 * 79.22497 * 8 7 6 30 30 H 1.09001 * 110.67209 * 202.36261 * 8 7 6 31 31 H 0.97000 * 119.99689 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9481 0.8652 0.8432 6 6 4.1041 0.8656 -1.3248 7 7 4.8707 1.9419 -1.9891 8 6 5.3253 2.8457 -0.9016 9 6 4.1067 2.8912 0.0542 10 1 3.3572 3.5942 -0.3095 11 6 4.5393 3.2471 1.4532 12 1 4.5278 2.4962 2.2295 13 6 4.9499 4.5312 1.7423 14 7 4.8516 5.4738 0.8305 15 14 5.6456 4.9320 3.4289 16 1 7.1271 4.8395 3.3879 17 1 5.2461 6.3093 3.8146 18 1 5.1167 3.9658 4.4249 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8900 26 1 4.7558 0.0154 -1.1235 27 1 3.2720 0.5540 -1.9564 28 1 5.6560 1.5651 -2.4982 29 1 6.1963 2.4301 -0.3949 30 1 5.5443 3.8391 -1.2932 31 1 5.1401 6.3773 1.0340 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986674.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:38 Heat of formation + Delta-G solvation = -26.027416 kcal Electronic energy + Delta-G solvation = -11429.406893 eV Core-core repulsion = 9516.466483 eV Total energy + Delta-G solvation = -1912.940410 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.92033 -34.15377 -32.64518 -29.83775 -28.16867 -24.97484 -23.90543 -21.45558 -19.70256 -18.80239 -16.65288 -15.07209 -14.90641 -14.30702 -13.98571 -13.10136 -12.66857 -12.32951 -12.03875 -11.89961 -11.39082 -11.20919 -10.93024 -10.76110 -10.53795 -10.48585 -10.25263 -9.75536 -9.56589 -9.01313 -8.88287 -8.37841 -7.61947 -6.01315 -4.03463 3.30236 3.37693 3.40603 4.43948 5.24936 5.31697 5.36266 5.42484 5.56629 5.78182 5.90758 6.05523 6.19066 6.25019 6.26487 6.39561 6.51971 6.64265 6.73005 6.83030 7.02250 7.10567 7.24765 7.53263 7.64419 7.87349 8.04635 8.23090 8.48726 9.01300 9.60237 11.08690 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040080 B = 0.012437 C = 0.010365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.432833 B = 2250.840961 C = 2700.841820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.097 4.097 5 H 0.061 0.939 6 C 0.046 3.954 7 N -0.683 5.683 8 C 0.049 3.951 9 C 0.057 3.943 10 H 0.046 0.954 11 C -0.514 4.514 12 H 0.055 0.945 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.888 3.112 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.045 0.955 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.316 0.684 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 -7.893 -1.869 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.116 4.116 5 H 0.079 0.921 6 C -0.083 4.083 7 N -0.310 5.310 8 C -0.079 4.079 9 C 0.038 3.962 10 H 0.064 0.936 11 C -0.553 4.553 12 H 0.073 0.927 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.064 0.936 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.822 -7.293 -2.127 8.504 hybrid contribution 1.253 -0.252 1.347 1.857 sum -2.569 -7.545 -0.780 8.009 Atomic orbital electron populations 1.21776 0.96707 1.00624 1.01668 1.21617 0.95024 0.98403 1.01270 1.21553 0.95670 0.94830 1.01841 1.22152 0.94400 1.00119 0.94882 0.92062 1.22696 0.97062 0.92732 0.95839 1.63181 1.25457 1.16960 1.25420 1.23226 0.98561 0.95397 0.90724 1.19593 0.92688 0.89835 0.94053 0.93588 1.21156 1.44130 0.95332 0.94640 0.92666 1.25008 0.95719 0.96334 0.96780 1.69981 1.46862 1.01710 1.33925 0.86650 0.79375 0.77692 0.84723 1.20787 1.21234 1.19891 0.93572 0.92910 0.92989 0.92535 0.92606 0.92479 0.91873 0.96112 0.91942 0.87127 0.95880 0.90768 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.13 -1.89 5.75 -26.73 -0.15 -2.04 16 3 C -0.10 -1.88 4.41 -26.73 -0.12 -2.00 16 4 C -0.10 -2.03 2.59 -89.26 -0.23 -2.26 16 5 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 6 C 0.05 0.88 6.71 -2.76 -0.02 0.86 16 7 N -0.68 -14.02 7.51 -110.08 -0.83 -14.85 16 8 C 0.05 1.19 6.78 -1.90 -0.01 1.18 16 9 C 0.06 1.46 2.34 -89.91 -0.21 1.25 16 10 H 0.05 1.30 7.81 -51.93 -0.41 0.90 16 11 C -0.51 -14.18 8.44 -34.44 -0.29 -14.47 16 12 H 0.06 1.51 7.53 -52.49 -0.40 1.11 16 13 C 0.06 1.78 5.37 -17.82 -0.10 1.68 16 14 N -0.89 -25.80 13.14 55.43 0.73 -25.07 16 15 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.81 6.87 -51.93 -0.36 0.45 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 1.11 6.72 -51.92 -0.35 0.76 16 28 H 0.32 5.63 8.92 -39.30 -0.35 5.28 16 29 H 0.02 0.56 8.04 -51.93 -0.42 0.14 16 30 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 250.83 15.07 3.78 3.78 Total: -1.00 -28.43 250.83 -7.29 -35.72 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.19 Total: 1.47 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.76 Total: -17.40 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.10 Total: -39.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.43 -7.29 -35.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986674.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.696 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds