Wall clock time and date at job start Thu Apr 9 2020 13:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46902 * 2 1 4 4 C 1.53001 * 110.06179 * 301.20222 * 3 2 1 5 5 N 1.47900 * 109.91893 * 62.41141 * 3 2 1 6 6 C 1.48531 * 105.81740 * 144.68144 * 5 3 2 7 7 C 1.54939 * 103.22684 * 320.79327 * 6 5 3 8 8 C 1.53995 * 109.91313 * 180.02562 * 3 2 1 9 9 H 1.09003 * 110.39260 * 120.46193 * 8 3 2 10 10 C 1.50697 * 110.30907 * 358.33520 * 8 3 2 11 11 H 1.08000 * 120.00502 * 299.23141 * 10 8 3 12 12 C 1.37877 * 119.99974 * 119.23559 * 10 8 3 13 13 N 1.31521 * 119.99892 * 187.39189 * 12 10 8 14 14 Si 1.86800 * 120.00073 * 7.38555 * 12 10 8 15 15 H 1.48494 * 109.47274 * 274.60991 * 14 12 10 16 16 H 1.48500 * 109.46789 * 34.61115 * 14 12 10 17 17 H 1.48504 * 109.47041 * 154.61141 * 14 12 10 18 18 H 1.08998 * 109.47559 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47160 * 300.00394 * 1 2 3 20 20 H 1.08998 * 109.47313 * 59.99820 * 1 2 3 21 21 H 1.08998 * 109.46816 * 239.99951 * 2 1 3 22 22 H 1.08999 * 109.46757 * 119.99657 * 2 1 3 23 23 H 1.09000 * 109.47411 * 298.79547 * 4 3 2 24 24 H 1.08997 * 109.47175 * 58.80250 * 4 3 2 25 25 H 1.09007 * 109.46401 * 178.79726 * 4 3 2 26 26 H 1.00894 * 110.99738 * 24.16926 * 5 3 2 27 27 H 1.08998 * 110.66622 * 202.35767 * 6 5 3 28 28 H 1.09001 * 110.81016 * 79.29970 * 6 5 3 29 29 H 1.09000 * 110.71891 * 279.05311 * 7 6 5 30 30 H 1.09000 * 110.72112 * 155.77708 * 7 6 5 31 31 H 0.97005 * 119.99235 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5129 2.1855 -1.2293 5 7 1.6008 2.1323 1.2324 6 6 2.7098 3.0493 1.6003 7 6 3.9777 2.2167 1.2846 8 6 3.5799 1.4545 -0.0006 9 1 3.9553 1.9755 -0.8814 10 6 4.1139 0.0459 0.0400 11 1 3.8783 -0.5971 0.8751 12 6 4.9033 -0.4220 -0.9890 13 7 5.2490 -1.6904 -1.0281 14 14 5.4817 0.7454 -2.3277 15 1 4.4372 0.8506 -3.3779 16 1 5.7307 2.0867 -1.7410 17 1 6.7370 0.2269 -2.9283 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8761 1.6962 -2.1330 24 1 0.4231 2.1727 -1.2220 25 1 1.8643 3.2172 -1.2084 26 1 1.4185 1.4704 1.9718 27 1 2.6672 3.2985 2.6606 28 1 2.6821 3.9537 0.9925 29 1 4.1936 1.5205 2.0951 30 1 4.8307 2.8690 1.0976 31 1 5.8047 -2.0194 -1.7520 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109873.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:46 Heat of formation + Delta-G solvation = -32.642585 kcal Electronic energy + Delta-G solvation = -11979.190410 eV Core-core repulsion = 10065.963144 eV Total energy + Delta-G solvation = -1913.227265 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34461 -34.72829 -34.30806 -31.42935 -29.98579 -27.93240 -25.24872 -23.62210 -21.62754 -19.82865 -18.73896 -16.89365 -16.29350 -15.85777 -15.46974 -14.65328 -14.59271 -13.94781 -13.67624 -13.49556 -13.02003 -12.78160 -12.70870 -12.53643 -12.02139 -11.91803 -11.70625 -11.53124 -11.46210 -10.95524 -10.72217 -10.58986 -9.38912 -8.26672 -6.23057 1.31438 1.33316 1.42360 2.34202 3.07273 3.49132 4.05935 4.19281 4.34306 4.47745 4.54431 4.67388 4.73616 4.84717 4.91062 4.95157 5.06888 5.09720 5.24911 5.29118 5.37146 5.40118 5.52995 5.62288 5.68065 5.79354 6.15630 6.35152 6.63776 6.79841 7.36790 8.89963 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.018103 C = 0.015908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.246818 B = 1546.357967 C = 1759.736011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C 0.100 3.900 4 C -0.123 4.123 5 N -0.660 5.660 6 C 0.047 3.953 7 C -0.151 4.151 8 C -0.019 4.019 9 H 0.035 0.965 10 C -0.485 4.485 11 H 0.035 0.965 12 C 0.011 3.989 13 N -0.950 5.950 14 Si 0.934 3.066 15 H -0.266 1.266 16 H -0.255 1.255 17 H -0.292 1.292 18 H 0.047 0.953 19 H 0.064 0.936 20 H 0.058 0.942 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.333 0.667 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 8.752 1.475 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C 0.008 3.992 4 C -0.180 4.180 5 N -0.287 5.287 6 C -0.082 4.082 7 C -0.190 4.190 8 C -0.039 4.039 9 H 0.053 0.947 10 C -0.523 4.523 11 H 0.053 0.947 12 C -0.186 4.186 13 N -0.591 5.591 14 Si 0.759 3.241 15 H -0.192 1.192 16 H -0.179 1.179 17 H -0.219 1.219 18 H 0.066 0.934 19 H 0.083 0.917 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.210 9.124 1.060 11.677 hybrid contribution 1.593 -0.870 -0.344 1.848 sum -5.617 8.254 0.715 10.010 Atomic orbital electron populations 1.21818 0.94892 1.00854 1.02354 1.21382 0.95065 0.95450 1.00643 1.21766 0.93618 0.92511 0.91259 1.21729 1.01471 0.99256 0.95573 1.62895 1.39327 1.20549 1.05941 1.23075 0.88077 0.96059 1.00992 1.23191 0.98940 0.98271 0.98600 1.20580 0.93988 0.94280 0.95086 0.94680 1.21076 1.28941 0.96976 1.05306 0.94691 1.25851 0.96533 0.96061 1.00129 1.70059 1.39206 1.15474 1.34346 0.85922 0.78055 0.80177 0.79908 1.19156 1.17909 1.21888 0.93391 0.91685 0.92281 0.94346 0.94444 0.94371 0.91048 0.92842 0.85117 0.89593 0.90280 0.93445 0.92458 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.40 71.98 0.68 -3.84 16 2 C -0.09 -3.56 3.66 30.60 0.11 -3.45 16 3 C 0.10 3.87 0.82 3.67 0.00 3.87 16 4 C -0.12 -4.28 8.27 71.98 0.60 -3.69 16 5 N -0.66 -21.93 6.48 -459.11 -2.97 -24.90 16 6 C 0.05 1.48 7.54 86.65 0.65 2.13 16 7 C -0.15 -5.88 6.60 31.81 0.21 -5.67 16 8 C -0.02 -0.86 2.54 -10.65 -0.03 -0.88 16 9 H 0.04 1.62 4.35 -2.39 -0.01 1.61 16 10 C -0.48 -26.68 6.54 25.60 0.17 -26.52 16 11 H 0.03 2.15 7.14 -2.91 -0.02 2.13 16 12 C 0.01 0.61 5.47 84.65 0.46 1.08 16 13 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 14 Si 0.93 44.59 27.02 68.60 1.85 46.44 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.25 -11.46 6.72 99.48 0.67 -10.80 16 17 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 18 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 19 H 0.06 1.88 7.49 -2.39 -0.02 1.86 16 20 H 0.06 1.75 6.43 -2.39 -0.02 1.73 16 21 H 0.04 1.81 7.56 -2.39 -0.02 1.79 16 22 H 0.04 1.67 6.91 -2.39 -0.02 1.65 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 2.20 6.40 -2.39 -0.02 2.19 16 25 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.33 10.81 8.11 -89.70 -0.73 10.08 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 1.96 7.86 -2.39 -0.02 1.94 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -61.20 238.62 2.37 -58.83 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.33 Total: 15.24 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 2.85 Total: -36.96 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.67 Total: -83.55 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.44 kcal Total: -61.20 2.37 -58.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109873.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.186 kcal (2) G-P(sol) polarization free energy of solvation -61.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds