Wall clock time and date at job start Thu Apr 9 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47345 * 2 1 4 4 C 1.52999 * 109.47536 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.06549 * 53.79346 * 4 3 2 6 6 N 1.47898 * 109.91881 * 292.58824 * 4 3 2 7 7 C 1.48731 * 105.94687 * 215.44550 * 6 4 3 8 8 C 1.54937 * 103.13384 * 38.95877 * 7 6 4 9 9 C 1.53994 * 109.91796 * 174.99849 * 4 3 2 10 10 H 1.08997 * 110.39266 * 239.53323 * 9 4 3 11 11 C 1.50696 * 110.31181 * 1.66239 * 9 4 3 12 12 H 1.07997 * 119.99835 * 357.16817 * 11 9 4 13 13 C 1.37874 * 120.00380 * 177.17198 * 11 9 4 14 14 N 1.31516 * 119.99737 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00294 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47359 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47319 * 119.99621 * 15 13 11 18 18 H 1.48500 * 109.47190 * 239.99856 * 15 13 11 19 19 H 1.08995 * 109.47315 * 59.99935 * 1 2 3 20 20 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47272 * 300.00241 * 1 2 3 22 22 H 1.08999 * 109.47272 * 239.99759 * 2 1 3 23 23 H 1.09005 * 109.47411 * 120.00113 * 2 1 3 24 24 H 1.09006 * 109.47737 * 59.99872 * 3 2 1 25 25 H 1.09006 * 109.47353 * 300.00032 * 3 2 1 26 26 H 1.00900 * 111.00108 * 94.79623 * 6 4 3 27 27 H 1.09000 * 110.57884 * 280.61628 * 7 6 4 28 28 H 1.09002 * 110.83660 * 157.42489 * 7 6 4 29 29 H 1.09002 * 110.72438 * 204.37671 * 8 7 6 30 30 H 1.08997 * 110.71973 * 81.27014 * 8 7 6 31 31 H 0.97006 * 119.99643 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9436 0.8379 -0.8270 6 7 4.0744 0.9082 1.2829 7 6 5.3090 1.6788 1.5893 8 6 4.9463 3.1172 1.1421 9 6 4.0945 2.8848 -0.1269 10 1 4.7105 2.9881 -1.0201 11 6 2.9445 3.8577 -0.1702 12 1 1.9280 3.4930 -0.1601 13 6 3.1899 5.2134 -0.2229 14 7 4.4278 5.6575 -0.2348 15 14 1.7644 6.4194 -0.2759 16 1 0.4819 5.6713 -0.2518 17 1 1.8344 7.3207 0.9022 18 1 1.8436 7.2250 -1.5209 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 4.2716 -0.0787 1.2112 27 1 6.1517 1.2976 1.0125 28 1 5.5283 1.6515 2.6567 29 1 5.8455 3.6855 0.9044 30 1 4.3631 3.6244 1.9106 31 1 4.6005 6.6114 -0.2715 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112291.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:49 Heat of formation + Delta-G solvation = -14.586701 kcal Electronic energy + Delta-G solvation = -11594.642583 eV Core-core repulsion = 9682.198280 eV Total energy + Delta-G solvation = -1912.444303 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.94373 -33.82012 -32.64595 -29.32178 -28.77004 -24.99098 -23.85229 -21.18893 -19.70885 -18.80846 -15.89849 -15.75115 -14.59127 -14.37887 -13.90849 -13.01280 -12.77198 -12.12028 -12.04270 -11.68779 -11.22573 -10.96104 -10.84534 -10.66463 -10.52723 -10.31451 -9.83527 -9.73353 -9.50500 -9.06068 -8.52625 -8.35310 -7.68146 -5.95362 -3.95852 3.33286 3.41509 3.45269 4.49406 5.12215 5.38447 5.52044 5.59312 5.75418 5.96160 6.12026 6.16305 6.30308 6.31875 6.37695 6.49696 6.54205 6.70231 6.88288 7.02344 7.20616 7.29072 7.37425 7.54381 7.71025 7.98903 8.09087 8.19627 8.52028 9.05289 9.67901 11.15176 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.016152 C = 0.011423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.792645 B = 1733.163237 C = 2450.679841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.086 4.086 4 C 0.076 3.924 5 H 0.021 0.979 6 N -0.668 5.668 7 C 0.030 3.970 8 C -0.089 4.089 9 C 0.042 3.958 10 H 0.025 0.975 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 H 0.050 0.950 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.315 0.685 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 -7.814 0.957 8.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.123 4.123 4 C -0.034 4.034 5 H 0.039 0.961 6 N -0.295 5.295 7 C -0.099 4.099 8 C -0.128 4.128 9 C 0.023 3.977 10 H 0.043 0.957 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.213 1.213 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.128 0.872 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.777 -7.273 1.388 7.908 hybrid contribution 0.067 0.391 -0.683 0.790 sum -2.710 -6.882 0.705 7.430 Atomic orbital electron populations 1.21748 0.96948 1.00246 1.01627 1.21657 0.94948 0.99343 1.00646 1.21599 0.94683 0.93430 1.02625 1.22292 0.95328 0.97724 0.88017 0.96070 1.63008 1.28019 1.05673 1.32839 1.23175 0.90548 0.97232 0.98979 1.22360 0.99565 0.91560 0.99303 1.19509 0.95052 0.89178 0.93921 0.95696 1.21578 0.93284 0.90468 1.49661 0.90783 1.25021 0.95298 0.98519 0.95384 1.70003 1.18426 1.13699 1.51102 0.86606 0.83053 0.81391 0.77398 1.19712 1.21206 1.21271 0.93129 0.93915 0.92929 0.93599 0.92367 0.91050 0.91415 0.87180 0.95944 0.92031 0.92544 0.92146 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.15 0.37 -1.77 16 2 C -0.13 -2.08 5.84 -26.74 -0.16 -2.24 16 3 C -0.09 -1.71 3.37 -26.73 -0.09 -1.80 16 4 C 0.08 1.60 3.27 -66.64 -0.22 1.39 16 5 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 6 N -0.67 -12.97 6.73 -102.98 -0.69 -13.67 16 7 C 0.03 0.59 7.57 -1.79 -0.01 0.58 16 8 C -0.09 -2.15 5.57 -24.87 -0.14 -2.29 16 9 C 0.04 1.07 2.92 -90.42 -0.26 0.80 16 10 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.51 -13.89 7.54 -34.44 -0.26 -14.15 16 12 H 0.07 1.95 4.70 -52.49 -0.25 1.71 16 13 C 0.06 1.63 5.33 -17.82 -0.09 1.54 16 14 N -0.89 -25.90 12.42 55.43 0.69 -25.21 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 24 H 0.07 1.57 7.40 -51.93 -0.38 1.18 16 25 H 0.07 1.42 6.81 -51.93 -0.35 1.07 16 26 H 0.31 5.26 8.92 -39.29 -0.35 4.91 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.06 1.58 7.85 -51.93 -0.41 1.17 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 246.37 15.07 3.71 3.71 Total: -1.00 -28.15 246.37 -7.27 -35.41 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.09 Total: 1.23 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.87 Total: -17.94 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.00 Total: -38.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.15 -7.27 -35.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112291.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.826 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds