Wall clock time and date at job start Thu Apr 9 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.47345 * 2 1 4 4 C 1.52999 * 109.47536 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.06549 * 53.79346 * 4 3 2 6 6 N 1.47898 * 109.91881 * 292.58824 * 4 3 2 7 7 C 1.48731 * 105.94687 * 215.44550 * 6 4 3 8 8 C 1.54937 * 103.13384 * 38.95877 * 7 6 4 9 9 C 1.53994 * 109.91796 * 174.99849 * 4 3 2 10 10 H 1.08997 * 110.39266 * 239.53323 * 9 4 3 11 11 C 1.50696 * 110.31181 * 1.66239 * 9 4 3 12 12 H 1.07997 * 119.99835 * 357.16817 * 11 9 4 13 13 C 1.37874 * 120.00380 * 177.17198 * 11 9 4 14 14 N 1.31516 * 119.99737 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00294 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47359 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47319 * 119.99621 * 15 13 11 18 18 H 1.48500 * 109.47190 * 239.99856 * 15 13 11 19 19 H 1.08995 * 109.47315 * 59.99935 * 1 2 3 20 20 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47272 * 300.00241 * 1 2 3 22 22 H 1.08999 * 109.47272 * 239.99759 * 2 1 3 23 23 H 1.09005 * 109.47411 * 120.00113 * 2 1 3 24 24 H 1.09006 * 109.47737 * 59.99872 * 3 2 1 25 25 H 1.09006 * 109.47353 * 300.00032 * 3 2 1 26 26 H 1.00900 * 111.00108 * 94.79623 * 6 4 3 27 27 H 1.09000 * 110.57884 * 280.61628 * 7 6 4 28 28 H 1.09002 * 110.83660 * 157.42489 * 7 6 4 29 29 H 1.09002 * 110.72438 * 204.37671 * 8 7 6 30 30 H 1.08997 * 110.71973 * 81.27014 * 8 7 6 31 31 H 0.97006 * 119.99643 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9436 0.8379 -0.8270 6 7 4.0744 0.9082 1.2829 7 6 5.3090 1.6788 1.5893 8 6 4.9463 3.1172 1.1421 9 6 4.0945 2.8848 -0.1269 10 1 4.7105 2.9881 -1.0201 11 6 2.9445 3.8577 -0.1702 12 1 1.9280 3.4930 -0.1601 13 6 3.1899 5.2134 -0.2229 14 7 4.4278 5.6575 -0.2348 15 14 1.7644 6.4194 -0.2759 16 1 0.4819 5.6713 -0.2518 17 1 1.8344 7.3207 0.9022 18 1 1.8436 7.2250 -1.5209 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 4.2716 -0.0787 1.2112 27 1 6.1517 1.2976 1.0125 28 1 5.5283 1.6515 2.6567 29 1 5.8455 3.6855 0.9044 30 1 4.3631 3.6244 1.9106 31 1 4.6005 6.6114 -0.2715 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112291.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:49 Heat of formation + Delta-G solvation = -32.613960 kcal Electronic energy + Delta-G solvation = -11595.424304 eV Core-core repulsion = 9682.198280 eV Total energy + Delta-G solvation = -1913.226024 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.68765 -35.26367 -34.68415 -31.12520 -30.45176 -26.77325 -25.67033 -22.65478 -21.42106 -20.68823 -17.84919 -17.50903 -16.50192 -15.89691 -15.62373 -14.49706 -14.36799 -13.94519 -13.61257 -13.49334 -12.89625 -12.68309 -12.49574 -12.40122 -12.28035 -11.95073 -11.63579 -11.38849 -11.24298 -10.83752 -10.54624 -10.47511 -9.27248 -8.08938 -6.14949 1.39890 1.42252 1.53200 2.45700 3.23390 3.52222 4.09765 4.28217 4.32567 4.45165 4.51279 4.57443 4.65208 4.91385 4.97671 5.06386 5.14547 5.19499 5.26037 5.40659 5.45553 5.56056 5.64016 5.70538 5.78544 5.90130 6.20450 6.42028 6.75006 6.93982 7.52052 9.01563 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.016152 C = 0.011423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.792645 B = 1733.163237 C = 2450.679841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.079 4.079 4 C 0.081 3.919 5 H 0.032 0.968 6 N -0.665 5.665 7 C 0.042 3.958 8 C -0.085 4.085 9 C 0.030 3.970 10 H -0.008 1.008 11 C -0.521 4.521 12 H 0.079 0.921 13 C 0.006 3.994 14 N -0.926 5.926 15 Si 0.949 3.051 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.284 1.284 19 H 0.048 0.952 20 H 0.067 0.933 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.337 0.663 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 -9.376 1.281 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.117 4.117 4 C -0.028 4.028 5 H 0.050 0.950 6 N -0.295 5.295 7 C -0.087 4.087 8 C -0.123 4.123 9 C 0.011 3.989 10 H 0.010 0.990 11 C -0.560 4.560 12 H 0.097 0.903 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.775 3.225 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.210 1.210 19 H 0.067 0.933 20 H 0.086 0.914 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.749 -8.861 1.713 9.773 hybrid contribution 0.405 0.866 -0.799 1.246 sum -3.344 -7.996 0.914 8.715 Atomic orbital electron populations 1.21731 0.95512 1.01819 1.01371 1.21555 0.96201 0.96367 1.01562 1.21439 0.93729 0.95914 1.00583 1.22143 0.96177 0.95187 0.89314 0.94974 1.62938 1.27861 1.07104 1.31611 1.23070 0.91166 0.94037 1.00470 1.22142 0.97980 0.94135 0.98086 1.19544 0.94507 0.91898 0.92988 0.98995 1.21973 0.94139 0.91134 1.48706 0.90345 1.25801 0.97597 1.00399 0.95398 1.70133 1.20283 1.13868 1.52353 0.85627 0.80437 0.79144 0.77243 1.18690 1.21139 1.20969 0.93277 0.91419 0.93392 0.92385 0.91633 0.93419 0.93118 0.84682 0.94208 0.89876 0.94700 0.94908 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.12 -3.54 5.84 30.59 0.18 -3.36 16 3 C -0.08 -3.06 3.37 30.59 0.10 -2.95 16 4 C 0.08 3.36 3.27 45.06 0.15 3.50 16 5 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 6 N -0.67 -24.29 6.73 -479.73 -3.23 -27.52 16 7 C 0.04 1.57 7.57 86.61 0.66 2.22 16 8 C -0.08 -4.14 5.57 31.80 0.18 -3.96 16 9 C 0.03 1.52 2.92 -10.66 -0.03 1.49 16 10 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 11 C -0.52 -28.77 7.54 25.60 0.19 -28.58 16 12 H 0.08 4.18 4.70 -2.91 -0.01 4.16 16 13 C 0.01 0.32 5.33 84.65 0.45 0.77 16 14 N -0.93 -55.14 12.42 21.45 0.27 -54.87 16 15 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 16 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 20 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.86 7.85 -2.38 -0.02 1.84 16 24 H 0.05 2.06 7.40 -2.38 -0.02 2.04 16 25 H 0.05 2.11 6.81 -2.38 -0.02 2.10 16 26 H 0.34 10.05 8.92 -89.69 -0.80 9.25 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.03 1.80 8.04 -2.39 -0.02 1.78 16 30 H 0.03 1.74 7.85 -2.39 -0.02 1.72 16 31 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -60.68 246.37 1.94 -58.74 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.29 Total: 11.03 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 2.59 Total: -33.98 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.96 Total: -82.39 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -60.68 1.94 -58.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112291.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.125 kcal (2) G-P(sol) polarization free energy of solvation -60.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds