Wall clock time and date at job start Thu Apr 9 2020 13:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 H 1.08996 * 109.47281 * 305.00527 * 3 2 1 5 5 N 1.46505 * 109.46635 * 64.99836 * 3 2 1 6 6 C 1.36940 * 120.00368 * 274.99537 * 5 3 2 7 7 H 1.07993 * 119.99398 * 0.02562 * 6 5 3 8 8 C 1.38807 * 120.00138 * 179.97438 * 6 5 3 9 9 N 1.31622 * 119.99988 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99903 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46993 * 60.00839 * 10 8 6 12 12 H 1.48504 * 109.46850 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47389 * 300.00502 * 10 8 6 14 14 C 1.52994 * 109.47387 * 184.99610 * 3 2 1 15 15 C 1.53782 * 113.61734 * 180.02562 * 14 3 2 16 16 C 1.53781 * 87.08260 * 220.02231 * 15 14 3 17 17 C 1.53786 * 87.17350 * 25.39213 * 16 15 14 18 18 H 1.09003 * 109.47179 * 59.99676 * 1 2 3 19 19 H 1.09003 * 109.47330 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47083 * 299.99797 * 1 2 3 21 21 H 1.09002 * 109.47083 * 240.00203 * 2 1 3 22 22 H 1.09003 * 109.47179 * 120.00324 * 2 1 3 23 23 H 0.97004 * 119.99592 * 95.00647 * 5 3 2 24 24 H 0.97002 * 119.99997 * 179.97438 * 9 8 6 25 25 H 1.09002 * 112.84929 * 311.20124 * 14 3 2 26 26 H 1.09001 * 113.61250 * 105.47049 * 15 14 3 27 27 H 1.08997 * 113.61225 * 334.56890 * 15 14 3 28 28 H 1.09002 * 113.61445 * 139.98212 * 16 15 14 29 29 H 1.09002 * 113.61408 * 270.79943 * 16 15 14 30 30 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 31 31 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6523 2.0974 1.2519 6 6 0.4155 2.6735 1.3689 7 1 -0.2742 2.6446 0.5384 8 6 0.0481 3.2935 2.5552 9 7 0.8886 3.3282 3.5674 10 14 -1.6393 4.0787 2.7150 11 1 -2.6870 3.0464 2.5104 12 1 -1.7840 4.6697 4.0697 13 1 -1.7883 5.1447 1.6919 14 6 3.5648 1.4444 -0.1256 15 6 4.1805 2.8535 -0.1347 16 6 5.1414 2.3413 -1.2205 17 6 4.0656 1.3009 -1.5744 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 2.2719 2.1231 1.9978 24 1 0.6320 3.7618 4.3963 25 1 4.0479 0.7616 0.5733 26 1 4.6774 3.1189 0.7985 27 1 3.4969 3.6264 -0.4860 28 1 5.3280 3.0641 -2.0148 29 1 6.0572 1.9043 -0.8222 30 1 3.3506 1.6486 -2.3200 31 1 4.4701 0.3147 -1.8019 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307652433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:17 Heat of formation + Delta-G solvation = -4.729151 kcal Electronic energy + Delta-G solvation = -11488.800691 eV Core-core repulsion = 9576.783843 eV Total energy + Delta-G solvation = -1912.016848 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01502 -36.72924 -34.11148 -31.52507 -28.71601 -26.40307 -25.26017 -23.88386 -21.41543 -20.27894 -19.00090 -16.92140 -16.16828 -15.91735 -15.60601 -14.72336 -14.70799 -13.92564 -13.25109 -13.19233 -13.00712 -12.79379 -12.68449 -12.43136 -12.12560 -12.10733 -11.72878 -11.38933 -11.24767 -11.04537 -10.93790 -10.60127 -8.89513 -7.86965 -5.11856 1.46935 1.49010 1.54688 2.59775 3.45437 3.72548 3.87909 3.94362 4.10054 4.33978 4.44841 4.52967 4.66469 4.75778 4.91870 4.99439 5.02734 5.15625 5.16391 5.16766 5.20130 5.35335 5.46378 5.56802 5.60811 5.71060 5.81555 6.35519 7.41299 8.20642 8.43707 9.36913 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.045374 B = 0.012320 C = 0.010568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.940594 B = 2272.239273 C = 2648.814068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.181 3.819 4 H 0.036 0.964 5 N -0.730 5.730 6 C -0.215 4.215 7 H 0.074 0.926 8 C -0.082 4.082 9 N -0.973 5.973 10 Si 0.961 3.039 11 H -0.280 1.280 12 H -0.299 1.299 13 H -0.281 1.281 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.130 4.130 17 C -0.120 4.120 18 H 0.045 0.955 19 H 0.052 0.948 20 H 0.044 0.956 21 H 0.072 0.928 22 H 0.041 0.959 23 H 0.370 0.630 24 H 0.247 0.753 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -4.787 -10.092 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.073 3.927 4 H 0.054 0.946 5 N -0.369 5.369 6 C -0.347 4.347 7 H 0.092 0.908 8 C -0.273 4.273 9 N -0.625 5.625 10 Si 0.791 3.209 11 H -0.206 1.206 12 H -0.226 1.226 13 H -0.207 1.207 14 C -0.137 4.137 15 C -0.170 4.170 16 C -0.168 4.168 17 C -0.158 4.158 18 H 0.064 0.936 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.091 0.909 22 H 0.060 0.940 23 H 0.201 0.799 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.087 -4.722 -10.156 12.301 hybrid contribution -0.862 0.626 0.959 1.434 sum 4.224 -4.096 -9.197 10.918 Atomic orbital electron populations 1.21733 0.96784 1.00333 1.01413 1.22031 0.95960 0.98427 1.00471 1.20510 0.92588 0.91624 0.88002 0.94558 1.42551 1.15377 1.66193 1.12813 1.19508 0.92596 1.25331 0.97302 0.90812 1.25423 1.01411 1.03806 0.96667 1.69809 1.36982 1.51384 1.04303 0.85376 0.80811 0.78517 0.76148 1.20632 1.22569 1.20701 1.22817 0.94754 0.97533 0.98550 1.22728 0.98528 0.96803 0.98958 1.22809 0.97105 0.98691 0.98163 1.22870 0.98048 0.99985 0.94869 0.93609 0.92892 0.93670 0.90929 0.94026 0.79878 0.94448 0.90109 0.93446 0.92158 0.90737 0.89295 0.90158 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.18 71.98 0.66 -4.72 16 2 C -0.13 -4.59 5.60 30.59 0.17 -4.42 16 3 C 0.18 7.14 2.20 44.99 0.10 7.24 16 4 H 0.04 1.49 7.89 -2.39 -0.02 1.47 16 5 N -0.73 -36.74 4.82 -322.95 -1.56 -38.30 16 6 C -0.22 -11.87 7.75 84.03 0.65 -11.22 16 7 H 0.07 3.94 7.32 -2.91 -0.02 3.92 16 8 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 9 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 10 Si 0.96 46.97 29.55 68.60 2.03 48.99 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 C -0.12 -3.85 3.19 -10.21 -0.03 -3.88 16 15 C -0.13 -4.41 7.40 31.12 0.23 -4.17 16 16 C -0.13 -3.19 8.08 31.12 0.25 -2.94 16 17 C -0.12 -3.00 7.65 31.18 0.24 -2.76 16 18 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 19 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 20 H 0.04 2.02 5.99 -2.39 -0.01 2.00 16 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.37 20.32 7.80 -92.71 -0.72 19.59 16 24 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.99 7.97 -2.39 -0.02 1.97 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -61.85 251.96 3.85 -58.00 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.36 Total: 22.65 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 2.74 Total: -31.15 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -1.27 Total: -98.49 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -61.85 3.85 -58.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307652433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.269 kcal (2) G-P(sol) polarization free energy of solvation -61.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds