Wall clock time and date at job start Thu Apr 9 2020 13:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46929 * 2 1 4 4 C 1.52997 * 109.47019 * 119.99870 * 2 1 3 5 5 H 1.09002 * 109.47067 * 184.99859 * 4 2 1 6 6 N 1.46496 * 109.47035 * 65.00521 * 4 2 1 7 7 C 1.36939 * 120.00173 * 154.99992 * 6 4 2 8 8 H 1.08003 * 119.99721 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00294 * 179.97438 * 7 6 4 10 10 N 1.31626 * 119.99975 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00470 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46805 * 59.99819 * 11 9 7 13 13 H 1.48490 * 109.47461 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46831 * 300.00271 * 11 9 7 15 15 C 1.52996 * 109.47365 * 304.99991 * 4 2 1 16 16 C 1.53002 * 117.49888 * 116.25530 * 15 4 2 17 17 C 1.53000 * 117.50107 * 184.91292 * 15 4 2 18 18 H 1.09003 * 109.47092 * 60.00422 * 1 2 3 19 19 H 1.09003 * 109.46797 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46865 * 300.00003 * 1 2 3 21 21 H 1.09005 * 109.47408 * 240.00291 * 2 1 3 22 22 H 1.08995 * 109.46950 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.46948 * 300.00112 * 3 2 1 24 24 H 1.08996 * 109.47066 * 59.99826 * 3 2 1 25 25 H 0.97000 * 120.00252 * 334.99645 * 6 4 2 26 26 H 0.96998 * 120.00279 * 179.97438 * 10 9 7 27 27 H 1.09002 * 115.54951 * 330.58504 * 15 4 2 28 28 H 1.09000 * 117.49996 * 215.00804 * 16 15 4 29 29 H 1.08999 * 117.49664 * 0.02562 * 16 15 4 30 30 H 1.09008 * 117.49673 * 359.97438 * 17 15 4 31 31 H 1.08999 * 117.49959 * 144.99502 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 7 1.6525 -2.1328 1.1905 7 6 2.3802 -3.0715 1.8721 8 1 3.2400 -2.7712 2.4526 9 6 2.0128 -4.4089 1.8169 10 7 0.9646 -4.7748 1.1098 11 14 3.0058 -5.6896 2.7461 12 1 2.9885 -5.3724 4.1967 13 1 2.4109 -7.0323 2.5265 14 1 4.4069 -5.6819 2.2543 15 6 1.4300 -0.0762 2.4953 16 6 0.5052 -0.9388 3.3565 17 6 1.9067 -0.5824 3.8582 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 0.8805 -2.4025 0.6689 26 1 0.7080 -5.7094 1.0709 27 1 1.1919 0.9838 2.4073 28 1 -0.3413 -0.4463 3.8349 29 1 0.3318 -1.9660 3.0355 30 1 2.6547 -1.3753 3.8670 31 1 1.9824 0.1446 4.6667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307662163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:21 Heat of formation + Delta-G solvation = 23.104720 kcal Electronic energy + Delta-G solvation = -11677.762326 eV Core-core repulsion = 9766.952445 eV Total energy + Delta-G solvation = -1910.809881 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.10800 -34.19627 -33.15756 -30.11242 -26.70541 -25.68892 -22.85599 -21.41914 -20.97308 -18.17685 -16.97781 -15.18380 -14.65565 -14.36687 -13.64453 -13.40668 -12.75617 -12.28074 -12.01258 -11.77630 -11.31010 -11.00414 -10.81774 -10.59187 -10.48593 -10.34027 -9.98217 -9.95166 -9.44979 -9.26795 -8.94932 -8.81174 -6.89288 -5.71973 -2.99426 3.46396 3.51326 3.51577 4.60973 4.76734 5.39917 5.46639 5.55955 5.63486 5.78052 5.96865 5.97806 6.01418 6.10726 6.21607 6.32160 6.37058 6.45606 6.48429 6.69215 6.80324 6.83440 7.02062 7.03980 7.15168 7.43109 7.76089 8.47617 9.58523 10.18241 10.53444 11.50607 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.046482 B = 0.013381 C = 0.012073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.245045 B = 2091.946292 C = 2318.654059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.142 4.142 4 C 0.207 3.793 5 H 0.047 0.953 6 N -0.719 5.719 7 C -0.231 4.231 8 H 0.068 0.932 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.287 1.287 15 C -0.170 4.170 16 C -0.164 4.164 17 C -0.185 4.185 18 H 0.039 0.961 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.385 0.615 26 H 0.254 0.746 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 9.609 0.286 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.200 4.200 4 C 0.097 3.903 5 H 0.065 0.935 6 N -0.360 5.360 7 C -0.362 4.362 8 H 0.086 0.914 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.733 3.267 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.214 1.214 15 C -0.191 4.191 16 C -0.201 4.201 17 C -0.222 4.222 18 H 0.058 0.942 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.219 0.781 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.335 9.481 0.371 9.494 hybrid contribution 0.248 -0.823 0.478 0.984 sum 0.583 8.658 0.849 8.719 Atomic orbital electron populations 1.21762 0.95591 1.02120 1.00238 1.21321 0.95983 0.95255 0.99253 1.21842 1.00605 0.96678 1.00900 1.19770 0.96031 0.84912 0.89636 0.93498 1.42488 1.34556 1.00190 1.58783 1.19170 1.07357 0.87432 1.22274 0.91360 1.24688 0.98391 0.97047 1.00865 1.69646 1.27539 1.16187 1.44916 0.86340 0.79413 0.81298 0.79626 1.21343 1.21819 1.21426 1.23251 1.04870 0.97364 0.93624 1.22932 0.91481 1.02961 1.02758 1.22835 0.99643 1.03186 0.96508 0.94209 0.92079 0.92838 0.91389 0.93104 0.93525 0.92783 0.78065 0.93578 0.89810 0.91676 0.86139 0.88562 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.75 37.16 0.33 -1.98 16 2 C -0.10 -1.69 2.85 -90.61 -0.26 -1.95 16 3 C -0.14 -2.00 9.01 37.16 0.33 -1.66 16 4 C 0.21 4.16 2.45 -67.94 -0.17 4.00 16 5 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 6 N -0.72 -17.58 3.69 -53.43 -0.20 -17.78 16 7 C -0.23 -6.26 8.10 -15.06 -0.12 -6.38 16 8 H 0.07 1.82 6.90 -52.48 -0.36 1.46 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 11 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.17 -3.16 4.14 -90.62 -0.38 -3.54 16 16 C -0.16 -3.28 9.69 -26.69 -0.26 -3.54 16 17 C -0.18 -3.52 9.88 -26.70 -0.26 -3.78 16 18 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 19 H 0.06 1.13 6.77 -51.93 -0.35 0.78 16 20 H 0.05 0.85 6.92 -51.93 -0.36 0.49 16 21 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.73 6.41 -51.93 -0.33 0.39 16 25 H 0.38 10.04 6.37 -40.82 -0.26 9.78 16 26 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.08 1.40 6.15 -51.93 -0.32 1.08 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.12 2.89 6.42 -51.93 -0.33 2.56 16 30 H 0.10 2.03 6.56 -51.92 -0.34 1.69 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 245.72 15.07 3.70 3.70 Total: -1.00 -28.29 245.72 -6.42 -34.71 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.75 Total: 8.48 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.88 Total: -19.32 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.53 Total: -45.00 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.29 -6.42 -34.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307662163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.820 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds