Wall clock time and date at job start Thu Apr 9 2020 13:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46929 * 2 1 4 4 C 1.52997 * 109.47019 * 119.99870 * 2 1 3 5 5 H 1.09002 * 109.47067 * 184.99859 * 4 2 1 6 6 N 1.46496 * 109.47035 * 65.00521 * 4 2 1 7 7 C 1.36939 * 120.00173 * 154.99992 * 6 4 2 8 8 H 1.08003 * 119.99721 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00294 * 179.97438 * 7 6 4 10 10 N 1.31626 * 119.99975 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00470 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46805 * 59.99819 * 11 9 7 13 13 H 1.48490 * 109.47461 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46831 * 300.00271 * 11 9 7 15 15 C 1.52996 * 109.47365 * 304.99991 * 4 2 1 16 16 C 1.53002 * 117.49888 * 116.25530 * 15 4 2 17 17 C 1.53000 * 117.50107 * 184.91292 * 15 4 2 18 18 H 1.09003 * 109.47092 * 60.00422 * 1 2 3 19 19 H 1.09003 * 109.46797 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46865 * 300.00003 * 1 2 3 21 21 H 1.09005 * 109.47408 * 240.00291 * 2 1 3 22 22 H 1.08995 * 109.46950 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.46948 * 300.00112 * 3 2 1 24 24 H 1.08996 * 109.47066 * 59.99826 * 3 2 1 25 25 H 0.97000 * 120.00252 * 334.99645 * 6 4 2 26 26 H 0.96998 * 120.00279 * 179.97438 * 10 9 7 27 27 H 1.09002 * 115.54951 * 330.58504 * 15 4 2 28 28 H 1.09000 * 117.49996 * 215.00804 * 16 15 4 29 29 H 1.08999 * 117.49664 * 0.02562 * 16 15 4 30 30 H 1.09008 * 117.49673 * 359.97438 * 17 15 4 31 31 H 1.08999 * 117.49959 * 144.99502 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 7 1.6525 -2.1328 1.1905 7 6 2.3802 -3.0715 1.8721 8 1 3.2400 -2.7712 2.4526 9 6 2.0128 -4.4089 1.8169 10 7 0.9646 -4.7748 1.1098 11 14 3.0058 -5.6896 2.7461 12 1 2.9885 -5.3724 4.1967 13 1 2.4109 -7.0323 2.5265 14 1 4.4069 -5.6819 2.2543 15 6 1.4300 -0.0762 2.4953 16 6 0.5052 -0.9388 3.3565 17 6 1.9067 -0.5824 3.8582 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 0.8805 -2.4025 0.6689 26 1 0.7080 -5.7094 1.0709 27 1 1.1919 0.9838 2.4073 28 1 -0.3413 -0.4463 3.8349 29 1 0.3318 -1.9660 3.0355 30 1 2.6547 -1.3753 3.8670 31 1 1.9824 0.1446 4.6667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307662163.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:20 Heat of formation + Delta-G solvation = 6.769500 kcal Electronic energy + Delta-G solvation = -11678.470674 eV Core-core repulsion = 9766.952445 eV Total energy + Delta-G solvation = -1911.518229 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.69566 -35.65296 -35.12094 -32.06754 -27.96076 -27.46240 -24.78595 -22.97778 -22.42207 -19.83204 -18.95080 -16.75170 -16.39940 -16.11388 -15.39824 -15.11076 -14.20257 -13.95791 -13.44991 -13.12315 -12.89179 -12.80621 -12.64634 -12.23734 -12.18672 -11.96096 -11.62632 -11.55385 -11.21315 -10.95004 -10.71974 -10.48874 -8.93315 -7.88935 -5.14689 1.46186 1.47968 1.53607 2.58262 3.18471 3.44784 3.93341 4.08242 4.16814 4.36234 4.43360 4.45464 4.51287 4.82564 4.91339 4.94978 4.98202 5.05978 5.14249 5.24552 5.33876 5.38686 5.45561 5.59419 5.67412 5.67646 5.75384 6.34097 7.40297 8.19039 8.42254 9.34509 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.046482 B = 0.013381 C = 0.012073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.245045 B = 2091.946292 C = 2318.654059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.198 3.802 5 H 0.036 0.964 6 N -0.727 5.727 7 C -0.219 4.219 8 H 0.070 0.930 9 C -0.076 4.076 10 N -0.970 5.970 11 Si 0.961 3.039 12 H -0.281 1.281 13 H -0.298 1.298 14 H -0.281 1.281 15 C -0.155 4.155 16 C -0.173 4.173 17 C -0.182 4.182 18 H 0.063 0.937 19 H 0.029 0.971 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.374 0.626 26 H 0.248 0.752 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 11.727 0.774 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.193 4.193 4 C 0.090 3.910 5 H 0.054 0.946 6 N -0.367 5.367 7 C -0.351 4.351 8 H 0.087 0.913 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.791 3.209 12 H -0.208 1.208 13 H -0.225 1.225 14 H -0.208 1.208 15 C -0.176 4.176 16 C -0.211 4.211 17 C -0.219 4.219 18 H 0.082 0.918 19 H 0.048 0.952 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.207 0.793 26 H 0.056 0.944 27 H 0.135 0.865 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.770 11.644 0.870 11.702 hybrid contribution 0.137 -1.407 0.318 1.449 sum 0.907 10.237 1.188 10.346 Atomic orbital electron populations 1.21703 0.94994 1.00584 1.01846 1.21264 0.96419 0.96995 0.96765 1.21779 1.00843 0.94108 1.02524 1.20026 0.95656 0.83155 0.92191 0.94572 1.42638 1.33929 1.01880 1.58243 1.19448 1.06737 0.88012 1.20950 0.91252 1.25382 0.99784 0.99009 1.02605 1.69798 1.29423 1.15882 1.47078 0.85388 0.78202 0.78680 0.78636 1.20787 1.22478 1.20751 1.23176 1.03569 0.98506 0.92325 1.22766 0.93023 1.01095 1.04187 1.22849 0.97997 1.03115 0.97928 0.91757 0.95177 0.92011 0.93011 0.92769 0.91444 0.91603 0.79321 0.94354 0.86517 0.89158 0.90682 0.91278 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.75 71.98 0.63 -3.54 16 2 C -0.10 -3.09 2.85 -10.79 -0.03 -3.13 16 3 C -0.13 -3.29 9.01 71.98 0.65 -2.64 16 4 C 0.20 7.80 2.45 44.99 0.11 7.91 16 5 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 6 N -0.73 -36.14 3.69 -322.96 -1.19 -37.34 16 7 C -0.22 -12.06 8.10 84.03 0.68 -11.38 16 8 H 0.07 3.74 6.90 -2.91 -0.02 3.72 16 9 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 10 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 11 Si 0.96 46.95 29.55 68.60 2.03 48.97 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 15 C -0.16 -5.41 4.14 -10.79 -0.04 -5.45 16 16 C -0.17 -6.71 9.69 30.62 0.30 -6.42 16 17 C -0.18 -6.57 9.88 30.62 0.30 -6.26 16 18 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 19 H 0.03 1.11 6.77 -2.39 -0.02 1.09 16 20 H 0.06 1.80 6.92 -2.39 -0.02 1.79 16 21 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.46 6.41 -2.39 -0.02 1.44 16 25 H 0.37 20.16 6.37 -92.71 -0.59 19.57 16 26 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.12 3.37 6.15 -2.39 -0.01 3.35 16 28 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.07 3.66 6.42 -2.39 -0.02 3.65 16 30 H 0.07 2.88 6.56 -2.38 -0.02 2.86 16 31 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -61.40 245.72 4.69 -56.71 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.51 Total: 25.96 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.06 Total: -34.83 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -0.91 Total: -96.82 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -61.40 4.69 -56.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307662163.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds