Wall clock time and date at job start Thu Apr 9 2020 13:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 N 1.46902 * 115.55957 * 277.53315 * 3 2 1 5 5 C 1.46897 * 111.00204 * 331.24839 * 4 3 2 6 6 H 1.09004 * 109.47310 * 45.98731 * 5 4 3 7 7 C 1.53005 * 109.46839 * 285.98987 * 5 4 3 8 8 C 1.50697 * 109.47445 * 165.99190 * 5 4 3 9 9 H 1.08003 * 119.99959 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00160 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00192 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00163 * 179.97438 * 10 8 5 13 13 H 1.48502 * 109.47233 * 90.00165 * 12 10 8 14 14 H 1.48500 * 109.47146 * 210.00269 * 12 10 8 15 15 H 1.48495 * 109.47162 * 329.99942 * 12 10 8 16 16 C 1.52997 * 117.50282 * 131.84798 * 3 2 1 17 17 C 1.52998 * 60.00154 * 252.50639 * 16 3 2 18 18 H 1.09000 * 109.47724 * 303.78880 * 1 2 3 19 19 H 1.09003 * 109.47078 * 63.79085 * 1 2 3 20 20 H 1.09000 * 109.47124 * 183.78434 * 1 2 3 21 21 H 1.08999 * 109.47271 * 239.99895 * 2 1 3 22 22 H 1.08998 * 109.46860 * 119.99441 * 2 1 3 23 23 H 1.00904 * 111.00445 * 95.19902 * 4 3 2 24 24 H 1.08995 * 109.47242 * 60.00051 * 7 5 4 25 25 H 1.09006 * 109.46858 * 179.97438 * 7 5 4 26 26 H 1.09002 * 109.47247 * 299.99508 * 7 5 4 27 27 H 0.96997 * 120.00500 * 179.97438 * 11 10 8 28 28 H 1.09006 * 117.49748 * 359.97438 * 16 3 2 29 29 H 1.08996 * 117.50186 * 145.02159 * 16 3 2 30 30 H 1.08996 * 117.50353 * 252.51084 * 17 16 3 31 31 H 1.08996 * 117.50265 * 107.48186 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0874 2.0980 -1.3138 5 6 2.2953 1.1149 -2.3854 6 1 1.6293 0.2655 -2.2335 7 6 3.7479 0.6347 -2.3621 8 6 1.9989 1.7538 -3.7177 9 1 1.6867 2.7867 -3.7637 10 6 2.1261 1.0197 -4.8778 11 7 2.5056 -0.2382 -4.8217 12 14 1.7579 1.8114 -6.5292 13 1 2.9978 2.4212 -7.0733 14 1 1.2587 0.7791 -7.4727 15 1 0.7244 2.8633 -6.3544 16 6 3.1290 1.8068 1.0109 17 6 1.6990 2.3124 1.2116 18 1 -0.3634 0.5715 0.8541 19 1 -0.3633 0.4539 -0.9220 20 1 -0.3633 -1.0254 0.0678 21 1 1.8933 -0.5138 -0.8900 22 1 1.8932 -0.5137 0.8900 23 1 1.2525 2.6403 -1.4778 24 1 3.9623 0.1726 -1.3985 25 1 3.9020 -0.0951 -3.1570 26 1 4.4139 1.4841 -2.5141 27 1 2.5948 -0.7548 -5.6379 28 1 3.4820 1.0189 1.6763 29 1 3.8807 2.5329 0.7012 30 1 1.5098 3.3710 1.0338 31 1 1.1114 1.8571 2.0086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307662862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:22 Heat of formation + Delta-G solvation = 17.493750 kcal Electronic energy + Delta-G solvation = -11586.900451 eV Core-core repulsion = 9675.847260 eV Total energy + Delta-G solvation = -1911.053191 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.25732 -34.25314 -31.61608 -31.07820 -27.52627 -25.17922 -23.43087 -21.73895 -20.47131 -17.97772 -16.57987 -15.33742 -14.74143 -14.25742 -13.92025 -13.18794 -12.76513 -12.28104 -11.88422 -11.32229 -11.31865 -10.96279 -10.91489 -10.63192 -10.52397 -10.33065 -10.14288 -10.07127 -9.69696 -9.16810 -8.71424 -8.41276 -7.15528 -5.99744 -4.04762 3.31531 3.37773 3.40987 4.35085 4.42580 5.06706 5.24818 5.32311 5.48525 5.57604 5.88477 5.96101 6.05841 6.14234 6.31800 6.35945 6.46464 6.65981 6.71153 6.77969 6.98361 7.21419 7.26108 7.60358 7.83261 7.93557 8.33444 8.45997 8.71886 9.05053 9.60476 11.06763 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.056378 B = 0.011418 C = 0.011165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.532815 B = 2451.634432 C = 2507.197662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.060 3.940 4 N -0.651 5.651 5 C 0.207 3.793 6 H 0.015 0.985 7 C -0.126 4.126 8 C -0.514 4.514 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.169 4.169 17 C -0.187 4.187 18 H 0.047 0.953 19 H 0.056 0.944 20 H 0.047 0.953 21 H 0.091 0.909 22 H 0.053 0.947 23 H 0.331 0.669 24 H 0.007 0.993 25 H 0.079 0.921 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 1.043 8.118 8.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.033 4.033 4 N -0.282 5.282 5 C 0.100 3.900 6 H 0.032 0.968 7 C -0.184 4.184 8 C -0.552 4.552 9 H 0.077 0.923 10 C -0.140 4.140 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.207 4.207 17 C -0.225 4.225 18 H 0.066 0.934 19 H 0.076 0.924 20 H 0.066 0.934 21 H 0.109 0.891 22 H 0.072 0.928 23 H 0.149 0.851 24 H 0.026 0.974 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.293 1.052 8.013 8.185 hybrid contribution -0.935 -0.003 -0.946 1.330 sum -2.228 1.050 7.067 7.484 Atomic orbital electron populations 1.21679 0.96039 1.00747 1.01635 1.21608 0.95718 0.95824 1.02858 1.21482 1.01102 0.92533 0.88182 1.60648 1.41803 1.26107 0.99620 1.19247 0.93639 0.89773 0.87339 0.96787 1.21721 0.97949 1.00245 0.98499 1.21218 1.45356 0.97852 0.90807 0.92329 1.24896 0.95223 0.94838 0.99082 1.69894 1.47529 1.07688 1.27921 0.86535 0.78538 0.78918 0.83612 1.20695 1.21327 1.19978 1.23077 0.92073 1.03108 1.02446 1.23051 0.99200 0.99775 1.00501 0.93417 0.92443 0.93359 0.89055 0.92847 0.85107 0.97368 0.90206 0.95208 0.93003 0.89963 0.88872 0.89157 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.77 37.16 0.36 -1.97 16 2 C -0.12 -2.18 5.09 -26.73 -0.14 -2.32 16 3 C 0.06 1.11 1.62 -131.60 -0.21 0.90 16 4 N -0.65 -14.25 6.49 -94.25 -0.61 -14.86 16 5 C 0.21 5.24 2.12 -68.86 -0.15 5.09 16 6 H 0.01 0.39 5.48 -51.93 -0.28 0.11 16 7 C -0.13 -3.18 8.78 37.16 0.33 -2.86 16 8 C -0.51 -14.23 8.62 -34.44 -0.30 -14.52 16 9 H 0.06 1.61 7.78 -52.48 -0.41 1.21 16 10 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 11 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 12 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.17 -2.81 10.10 -26.73 -0.27 -3.08 16 17 C -0.19 -2.91 9.65 -26.73 -0.26 -3.17 16 18 H 0.05 0.69 7.39 -51.93 -0.38 0.30 16 19 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.09 1.92 5.01 -51.93 -0.26 1.66 16 22 H 0.05 0.86 7.92 -51.93 -0.41 0.45 16 23 H 0.33 7.08 8.58 -39.29 -0.34 6.74 16 24 H 0.01 0.17 7.18 -51.93 -0.37 -0.20 16 25 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.17 7.80 -51.93 -0.40 0.76 16 LS Contribution 249.99 15.07 3.77 3.77 Total: -1.00 -28.04 249.99 -6.81 -34.85 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.84 Total: 5.02 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -0.73 Total: -20.34 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.02 Total: -39.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.04 -6.81 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307662862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds