Wall clock time and date at job start Thu Apr 9 2020 13:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 115.55868 * 2 1 4 4 C 1.52997 * 117.50013 * 214.31591 * 2 1 3 5 5 C 1.52992 * 59.99963 * 252.51069 * 4 2 1 6 6 C 1.53003 * 117.50499 * 107.51250 * 5 4 2 7 7 C 1.53002 * 117.49866 * 252.51117 * 5 4 2 8 8 N 1.46500 * 109.46873 * 294.70536 * 7 5 4 9 9 C 1.36942 * 120.00089 * 174.91194 * 8 7 5 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00219 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00068 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99913 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47078 * 89.99831 * 13 11 9 15 15 H 1.48497 * 109.46517 * 209.99893 * 13 11 9 16 16 H 1.48499 * 109.46983 * 329.99817 * 13 11 9 17 17 H 1.08998 * 109.46862 * 274.30807 * 1 2 3 18 18 H 1.08996 * 109.47380 * 34.30623 * 1 2 3 19 19 H 1.08996 * 109.47193 * 154.30896 * 1 2 3 20 20 H 1.08994 * 109.47000 * 205.68782 * 3 2 1 21 21 H 1.08995 * 109.47835 * 325.69270 * 3 2 1 22 22 H 1.09011 * 109.46864 * 85.69297 * 3 2 1 23 23 H 1.08995 * 117.49841 * 145.01790 * 4 2 1 24 24 H 1.09002 * 117.51387 * 359.97438 * 4 2 1 25 25 H 1.08993 * 109.47275 * 211.29482 * 6 5 4 26 26 H 1.09002 * 109.46461 * 331.29671 * 6 5 4 27 27 H 1.08998 * 109.46881 * 91.28935 * 6 5 4 28 28 H 1.09005 * 109.46983 * 54.70414 * 7 5 4 29 29 H 1.09001 * 109.47677 * 174.70284 * 7 5 4 30 30 H 0.96993 * 120.00539 * 354.90978 * 8 7 5 31 31 H 0.96993 * 120.00124 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2364 -1.1210 0.7648 6 6 1.3593 -2.1566 1.4713 7 6 3.5490 -0.7760 1.4714 8 7 4.5447 -1.8116 1.1847 9 6 5.8326 -1.6641 1.6262 10 1 6.1141 -0.7845 2.1861 11 6 6.7760 -2.6456 1.3550 12 7 6.4326 -3.7183 0.6740 13 14 8.5326 -2.4447 1.9580 14 1 8.6631 -3.0431 3.3108 15 1 9.4587 -3.1310 1.0217 16 1 8.8723 -1.0005 2.0206 17 1 -0.3633 0.0772 1.0248 18 1 -0.3634 0.8488 -0.5792 19 1 -0.3633 -0.9260 -0.4455 20 1 3.1823 1.3085 -0.4454 21 1 1.5812 2.0744 -0.5792 22 1 2.2772 1.7413 1.0249 23 1 3.1715 -0.8750 -1.2683 24 1 1.6115 -1.8587 -1.2682 25 1 1.0058 -1.7481 2.4180 26 1 0.5053 -2.4010 0.8395 27 1 1.9418 -3.0584 1.6596 28 1 3.9125 0.1870 1.1125 29 1 3.3797 -0.7225 2.5468 30 1 4.2919 -2.6017 0.6822 31 1 7.0918 -4.4039 0.4842 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575563458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:01 Heat of formation + Delta-G solvation = 18.402842 kcal Electronic energy + Delta-G solvation = -11322.755491 eV Core-core repulsion = 9411.741721 eV Total energy + Delta-G solvation = -1911.013770 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.86242 -34.09064 -31.17110 -29.66039 -27.83045 -26.74484 -25.18884 -22.53106 -19.79259 -17.76690 -16.63971 -14.76512 -14.53853 -14.37743 -13.64031 -13.17530 -12.88971 -12.63420 -12.06512 -12.00182 -11.76169 -11.69931 -11.59677 -10.94717 -10.89315 -10.77600 -10.27651 -9.93370 -9.72608 -9.24223 -8.87519 -8.77910 -6.82097 -5.69796 -2.97256 3.47119 3.51828 3.53761 4.08565 4.66554 5.06619 5.09576 5.24407 5.37100 5.60729 5.72133 5.82447 5.86261 6.07297 6.12704 6.15222 6.16997 6.23500 6.31633 6.38332 6.45575 6.64049 6.67640 6.71309 6.87140 7.02614 7.75388 8.49672 9.60669 10.21541 10.57290 11.53246 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068788 B = 0.009571 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.948097 B = 2924.809932 C = 3075.774984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.133 4.133 3 C -0.111 4.111 4 C -0.157 4.157 5 C -0.118 4.118 6 C -0.109 4.109 7 C 0.185 3.815 8 N -0.728 5.728 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.283 1.283 17 H 0.055 0.945 18 H 0.053 0.947 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.385 0.615 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 6.528 -1.171 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.133 4.133 3 C -0.168 4.168 4 C -0.194 4.194 5 C -0.118 4.118 6 C -0.166 4.166 7 C 0.058 3.942 8 N -0.372 5.372 9 C -0.367 4.367 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 H 0.074 0.926 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.114 0.886 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.218 0.782 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.431 6.601 -1.092 12.392 hybrid contribution 0.980 -0.285 0.143 1.030 sum -9.451 6.316 -0.949 11.407 Atomic orbital electron populations 1.21290 0.92778 1.01200 1.01284 1.21626 0.94026 0.91514 1.06176 1.21315 1.00107 0.93917 1.01480 1.23183 1.01825 1.00034 0.94386 1.21856 0.97940 0.98427 0.93592 1.21258 0.97974 0.98216 0.99200 1.20216 0.85884 0.92629 0.95520 1.42330 1.06321 1.21991 1.66585 1.19251 0.86274 1.03354 1.27856 0.91324 1.24726 0.98173 0.97011 1.01263 1.69667 1.33662 1.10073 1.44870 0.86199 0.84926 0.77216 0.77938 1.21801 1.21823 1.20839 0.92595 0.92787 0.92766 0.92086 0.92980 0.92444 0.88593 0.89637 0.92871 0.93283 0.91691 0.95515 0.96631 0.78171 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.72 37.16 0.32 -1.00 16 2 C -0.13 -1.99 2.70 -154.51 -0.42 -2.41 16 3 C -0.11 -1.57 8.37 37.16 0.31 -1.26 16 4 C -0.16 -2.67 9.19 -26.74 -0.25 -2.91 16 5 C -0.12 -2.09 2.11 -154.51 -0.33 -2.41 16 6 C -0.11 -1.77 9.12 37.16 0.34 -1.43 16 7 C 0.18 3.98 5.97 -4.04 -0.02 3.96 16 8 N -0.73 -19.23 5.56 -59.90 -0.33 -19.56 16 9 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 13 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 18 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 19 H 0.05 0.64 7.28 -51.93 -0.38 0.26 16 20 H 0.06 0.94 7.33 -51.93 -0.38 0.56 16 21 H 0.05 0.62 7.92 -51.93 -0.41 0.21 16 22 H 0.06 0.80 8.09 -51.92 -0.42 0.38 16 23 H 0.10 1.80 8.05 -51.93 -0.42 1.38 16 24 H 0.09 1.33 8.05 -51.93 -0.42 0.92 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.69 6.96 -51.93 -0.36 0.33 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.03 0.58 6.07 -51.93 -0.32 0.26 16 29 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.38 10.70 7.67 -40.82 -0.31 10.38 16 31 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 255.20 15.07 3.85 3.85 Total: -1.00 -30.47 255.20 -6.14 -36.61 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.06 Total: 4.43 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.29 Total: -15.01 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.39 Total: -47.75 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.47 -6.14 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575563458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.008 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds