Wall clock time and date at job start Thu Apr 9 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 115.56568 * 2 1 4 4 C 1.53006 * 117.49907 * 145.69112 * 2 1 3 5 5 C 1.52997 * 59.99924 * 107.49013 * 4 2 1 6 6 C 1.53006 * 117.49537 * 252.50879 * 5 4 2 7 7 N 1.46902 * 117.50071 * 107.49310 * 5 4 2 8 8 C 1.46900 * 110.99837 * 111.37236 * 7 5 4 9 9 C 1.50704 * 109.47079 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99917 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00330 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99797 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00218 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46599 * 60.00539 * 13 11 9 15 15 H 1.48500 * 109.47003 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47013 * 300.00447 * 13 11 9 17 17 H 1.09005 * 109.47386 * 325.70133 * 1 2 3 18 18 H 1.09005 * 109.47489 * 85.70139 * 1 2 3 19 19 H 1.08994 * 109.47627 * 205.70592 * 1 2 3 20 20 H 1.09003 * 109.47433 * 154.29953 * 3 2 1 21 21 H 1.09002 * 109.47174 * 274.29880 * 3 2 1 22 22 H 1.09001 * 109.47126 * 34.29397 * 3 2 1 23 23 H 1.08999 * 117.49661 * 214.97815 * 4 2 1 24 24 H 1.08999 * 117.49552 * 359.97335 * 4 2 1 25 25 H 1.09000 * 109.46919 * 128.62542 * 6 5 4 26 26 H 1.09000 * 109.47139 * 248.61899 * 6 5 4 27 27 H 1.08994 * 109.47047 * 8.62817 * 6 5 4 28 28 H 1.00896 * 110.99951 * 235.32352 * 7 5 4 29 29 H 1.08995 * 109.47374 * 300.00152 * 8 7 5 30 30 H 1.09006 * 109.47024 * 60.00409 * 8 7 5 31 31 H 0.97001 * 120.00213 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1211 0.7650 5 6 2.2364 -1.1210 -0.7650 6 6 1.3587 -2.1562 -1.4714 7 7 3.4966 -0.7897 -1.4433 8 6 4.0496 -1.9648 -2.1298 9 6 5.3387 -1.5870 -2.8129 10 1 5.7102 -0.5753 -2.7437 11 6 6.0444 -2.5332 -3.5254 12 7 5.5923 -3.7654 -3.6093 13 14 7.6426 -2.0651 -4.3716 14 1 8.6148 -1.5796 -3.3594 15 1 8.2016 -3.2530 -5.0657 16 1 7.3816 -0.9905 -5.3628 17 1 -0.3634 0.8490 0.5791 18 1 -0.3634 0.0770 -1.0248 19 1 -0.3634 -0.9259 0.4457 20 1 3.1823 1.3084 0.4457 21 1 2.2775 1.7412 -1.0248 22 1 1.5810 2.0743 0.5790 23 1 3.1715 -0.8752 1.2682 24 1 1.6111 -1.8583 1.2686 25 1 0.7294 -1.6569 -2.2082 26 1 1.9921 -2.8889 -1.9715 27 1 0.7294 -2.6602 -0.7380 28 1 3.3705 -0.0219 -2.0856 29 1 4.2411 -2.7538 -1.4025 30 1 3.3359 -2.3209 -2.8728 31 1 6.0889 -4.4312 -4.1103 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575563766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:04 Heat of formation + Delta-G solvation = -8.816953 kcal Electronic energy + Delta-G solvation = -11286.473592 eV Core-core repulsion = 9374.279484 eV Total energy + Delta-G solvation = -1912.194108 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.10353 -35.88819 -33.87627 -30.67750 -29.07297 -28.08512 -27.46663 -24.08785 -21.11979 -19.38642 -18.33165 -16.72615 -16.38884 -15.67700 -15.34745 -14.66203 -14.31062 -14.04972 -13.92199 -13.30652 -13.07337 -13.02177 -12.89066 -12.65677 -12.59807 -12.40193 -12.08323 -11.87827 -11.34955 -10.78380 -10.61666 -10.18520 -9.02796 -8.22583 -6.33987 1.39650 1.43481 1.51495 2.38973 2.83117 3.10222 3.42018 3.84842 3.95880 4.24024 4.28054 4.57546 4.75186 4.84954 4.91155 4.93352 5.01592 5.06062 5.12770 5.14453 5.17234 5.26394 5.32079 5.47076 5.60107 5.64008 6.05182 6.48583 6.76180 6.90348 7.36722 8.88541 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068950 B = 0.009377 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.991607 B = 2985.166263 C = 3215.947613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C -0.105 4.105 4 C -0.161 4.161 5 C 0.016 3.984 6 C -0.136 4.136 7 N -0.652 5.652 8 C 0.215 3.785 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.266 1.266 17 H 0.077 0.923 18 H 0.058 0.942 19 H 0.061 0.939 20 H 0.047 0.953 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.331 0.669 29 H -0.008 1.008 30 H -0.026 1.026 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 7.244 5.698 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.162 4.162 4 C -0.199 4.199 5 C -0.076 4.076 6 C -0.195 4.195 7 N -0.282 5.282 8 C 0.088 3.912 9 C -0.578 4.578 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.191 1.191 17 H 0.096 0.904 18 H 0.077 0.923 19 H 0.080 0.920 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.010 0.990 30 H -0.009 1.009 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.387 6.990 6.181 12.546 hybrid contribution 0.449 -0.466 -1.273 1.429 sum -7.937 6.523 4.907 11.386 Atomic orbital electron populations 1.21349 0.90310 1.02770 1.02118 1.21901 0.95449 0.91252 1.02263 1.21198 0.99873 0.93482 1.01664 1.23410 1.01742 1.01467 0.93279 1.21851 0.91736 1.00289 0.93759 1.21716 0.98773 0.98303 1.00675 1.60417 1.23805 1.09046 1.34885 1.19162 0.92987 0.88415 0.90669 1.21562 1.07785 0.96967 1.31500 0.91985 1.25951 1.01912 0.94704 0.97100 1.70088 1.40977 1.03533 1.42689 0.85385 0.78603 0.77755 0.78539 1.19447 1.20644 1.19052 0.90369 0.92307 0.91997 0.93376 0.92880 0.90397 0.90054 0.88015 0.92053 0.94146 0.90723 0.85046 0.98956 1.00872 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 8.88 71.98 0.64 -1.73 16 2 C -0.11 -3.08 2.70 -52.18 -0.14 -3.23 16 3 C -0.11 -2.80 9.16 71.98 0.66 -2.14 16 4 C -0.16 -5.23 9.39 30.60 0.29 -4.94 16 5 C 0.02 0.59 2.77 3.53 0.01 0.60 16 6 C -0.14 -4.87 8.51 71.98 0.61 -4.26 16 7 N -0.65 -29.48 6.16 -474.13 -2.92 -32.40 16 8 C 0.22 11.92 4.45 85.56 0.38 12.30 16 9 C -0.54 -31.69 9.32 25.60 0.24 -31.45 16 10 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 11 C 0.00 0.09 5.46 84.65 0.46 0.55 16 12 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 13 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H 0.08 1.38 7.92 -2.38 -0.02 1.36 16 18 H 0.06 1.28 8.02 -2.38 -0.02 1.26 16 19 H 0.06 1.27 7.77 -2.39 -0.02 1.25 16 20 H 0.05 1.42 7.90 -2.39 -0.02 1.40 16 21 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 22 H 0.08 1.62 7.92 -2.39 -0.02 1.61 16 23 H 0.08 2.84 8.05 -2.39 -0.02 2.82 16 24 H 0.10 2.88 7.96 -2.39 -0.02 2.87 16 25 H 0.06 2.00 8.02 -2.39 -0.02 1.98 16 26 H 0.04 1.75 5.60 -2.39 -0.01 1.73 16 27 H 0.07 2.25 7.78 -2.39 -0.02 2.23 16 28 H 0.33 14.39 8.37 -89.70 -0.75 13.64 16 29 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H -0.03 -1.54 6.35 -2.38 -0.02 -1.55 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -64.38 254.80 2.88 -61.50 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.34 Total: 15.17 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 3.15 Total: -34.29 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.64 Total: -89.49 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.38 2.88 -61.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575563766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.687 kcal (2) G-P(sol) polarization free energy of solvation -64.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds