Wall clock time and date at job start Thu Apr 9 2020 13:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09007 * 108.96099 * 306.20135 * 10 9 7 12 12 C 1.54198 * 108.98108 * 187.47517 * 10 9 7 13 13 C 1.50621 * 109.06752 * 161.82350 * 12 10 9 14 14 C 1.53813 * 112.46725 * 90.33075 * 13 12 10 15 15 O 1.43992 * 113.41119 * 317.88965 * 14 13 12 16 16 C 1.40325 * 116.58017 * 317.89161 * 15 14 13 17 17 C 1.46286 * 108.97680 * 64.99711 * 10 9 7 18 18 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08993 * 109.54466 * 281.70293 * 12 10 9 22 22 H 1.09003 * 109.53611 * 41.95241 * 12 10 9 23 23 H 1.09004 * 108.88327 * 329.56361 * 13 12 10 24 24 H 1.09003 * 108.80982 * 211.04892 * 13 12 10 25 25 H 1.09001 * 108.70282 * 196.87218 * 14 13 12 26 26 H 1.09007 * 108.59522 * 78.82956 * 14 13 12 27 27 H 1.09000 * 109.59851 * 335.27172 * 16 15 14 28 28 H 1.09002 * 109.72509 * 214.88315 * 16 15 14 29 29 H 1.09001 * 108.93988 * 302.76205 * 17 10 9 30 30 H 1.08999 * 108.93559 * 61.45836 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 1 3.5651 -3.1738 0.8315 12 6 5.5516 -2.6277 0.1902 13 6 6.0003 -3.9954 0.6337 14 6 6.3543 -4.9107 -0.5507 15 8 5.4247 -4.8140 -1.6462 16 6 4.0632 -4.7575 -1.3113 17 6 3.6292 -3.2798 -1.2541 18 1 -0.4850 0.8401 -0.0004 19 1 3.8751 -0.6798 -0.8895 20 1 3.8745 -0.6810 0.8905 21 1 6.0348 -2.3736 -0.7531 22 1 5.8203 -1.8923 0.9486 23 1 5.2004 -4.4592 1.2110 24 1 6.8780 -3.8879 1.2710 25 1 6.3756 -5.9427 -0.2008 26 1 7.3479 -4.6441 -0.9111 27 1 3.9065 -5.2225 -0.3380 28 1 3.4767 -5.2819 -2.0657 29 1 2.5453 -3.2254 -1.3557 30 1 4.0893 -2.7449 -2.0849 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:06 Heat of formation + Delta-G solvation = -89.191458 kcal Electronic energy + Delta-G solvation = -11639.724366 eV Core-core repulsion = 9626.326296 eV Total energy + Delta-G solvation = -2013.398071 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41481 -36.98499 -34.62631 -33.45248 -30.67310 -27.59997 -26.20778 -23.52469 -21.47906 -20.92348 -18.92553 -17.43835 -17.11855 -16.29700 -16.04266 -15.26147 -14.90678 -14.49602 -13.93204 -13.62064 -13.38400 -13.10111 -12.95471 -12.49298 -12.16987 -11.94152 -11.68907 -11.37142 -11.24366 -11.06969 -10.90314 -10.75143 -10.25023 -8.28216 -6.30379 1.34290 1.35349 1.47547 2.35944 2.99557 3.07484 3.83120 4.01563 4.04174 4.20734 4.26733 4.47752 4.60655 4.68798 4.76032 4.84568 5.07618 5.09230 5.13502 5.23222 5.30878 5.37002 5.43598 5.57661 5.72201 5.78085 6.31456 6.53247 6.76453 7.33347 8.88303 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.065869 B = 0.010781 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.985729 B = 2596.421756 C = 2829.235436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.521 4.521 8 H 0.036 0.964 9 C -0.009 4.009 10 C -0.071 4.071 11 H 0.048 0.952 12 C -0.110 4.110 13 C -0.149 4.149 14 C 0.059 3.941 15 O -0.404 6.404 16 C 0.075 3.925 17 C -0.132 4.132 18 H 0.265 0.735 19 H 0.011 0.989 20 H 0.016 0.984 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 -7.325 0.214 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.559 4.559 8 H 0.055 0.945 9 C -0.046 4.046 10 C -0.089 4.089 11 H 0.067 0.933 12 C -0.147 4.147 13 C -0.187 4.187 14 C -0.016 4.016 15 O -0.323 6.323 16 C -0.002 4.002 17 C -0.170 4.170 18 H 0.073 0.927 19 H 0.029 0.971 20 H 0.035 0.965 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.384 -7.219 0.043 15.206 hybrid contribution -0.611 0.953 0.270 1.164 sum 12.773 -6.266 0.313 14.230 Atomic orbital electron populations 1.70068 1.08177 1.27951 1.53166 1.25998 0.95596 1.03395 0.94503 0.85697 0.79522 0.78637 0.79026 1.19485 1.20985 1.17184 1.21496 0.91950 0.93002 1.49415 0.94525 1.19679 0.94064 0.94958 0.95943 1.20041 0.95287 0.96182 0.97427 0.93346 1.21359 0.94416 0.97487 1.01469 1.21917 1.02734 0.95376 0.98651 1.23114 0.92698 0.98721 0.87115 1.87385 1.16196 1.94527 1.34183 1.22304 0.82230 0.94760 1.00885 1.21045 1.00865 0.97040 0.98025 0.92656 0.97066 0.96540 0.91998 0.91749 0.92238 0.88657 0.91802 0.88312 0.92531 0.89243 0.93010 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 45.37 27.47 68.60 1.88 47.26 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.52 -30.34 8.86 25.60 0.23 -30.11 16 8 H 0.04 2.33 7.21 -2.91 -0.02 2.31 16 9 C -0.01 -0.44 3.44 29.85 0.10 -0.33 16 10 C -0.07 -2.80 1.73 -12.46 -0.02 -2.82 16 11 H 0.05 1.98 7.58 -2.38 -0.02 1.96 16 12 C -0.11 -3.40 4.97 30.23 0.15 -3.25 16 13 C -0.15 -3.58 5.32 30.10 0.16 -3.42 16 14 C 0.06 1.34 6.67 72.26 0.48 1.83 16 15 O -0.40 -12.01 10.17 -143.47 -1.46 -13.47 16 16 C 0.08 2.31 6.38 72.36 0.46 2.77 16 17 C -0.13 -5.09 4.58 28.90 0.13 -4.95 16 18 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 19 H 0.01 0.53 7.56 -2.39 -0.02 0.51 16 20 H 0.02 0.77 7.04 -2.39 -0.02 0.76 16 21 H 0.06 1.93 7.82 -2.39 -0.02 1.91 16 22 H 0.06 1.93 7.90 -2.39 -0.02 1.91 16 23 H 0.06 1.49 6.83 -2.39 -0.02 1.48 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.06 1.61 6.98 -2.39 -0.02 1.60 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.05 2.30 6.61 -2.39 -0.02 2.28 16 30 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 Total: -1.00 -66.00 234.30 3.92 -62.08 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.04 Total: 4.23 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 2.16 Total: -39.75 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.30 Total: -60.35 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.46 Total: -13.47 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.26 kcal Total: -66.00 3.92 -62.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.113 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds