Wall clock time and date at job start Thu Apr 9 2020 13:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 C 1.50707 * 109.52074 * 57.07162 * 3 2 1 5 5 H 1.08001 * 119.99846 * 237.79741 * 4 3 2 6 6 C 1.37870 * 119.99771 * 57.80038 * 4 3 2 7 7 N 1.31509 * 120.00504 * 0.05629 * 6 4 3 8 8 Si 1.86802 * 119.99821 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47187 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47294 * 299.99932 * 8 6 4 11 11 H 1.48504 * 109.47021 * 60.00145 * 8 6 4 12 12 C 1.53178 * 109.52588 * 177.19662 * 3 2 1 13 13 C 1.53172 * 109.03816 * 176.95159 * 12 3 2 14 14 C 1.53096 * 109.16234 * 303.01742 * 13 12 3 15 15 O 1.42898 * 109.41404 * 57.61195 * 14 13 12 16 16 C 1.42903 * 114.09754 * 298.84257 * 15 14 13 17 17 H 1.09002 * 109.47137 * 184.73080 * 1 2 3 18 18 H 1.09001 * 109.47114 * 304.73100 * 1 2 3 19 19 H 1.08995 * 109.47044 * 64.73729 * 1 2 3 20 20 H 1.09000 * 109.47392 * 240.00006 * 2 1 3 21 21 H 1.09002 * 109.47096 * 120.00548 * 2 1 3 22 22 H 0.97000 * 120.00058 * 5.57174 * 7 6 4 23 23 H 1.09005 * 109.54329 * 296.81755 * 12 3 2 24 24 H 1.09006 * 109.54185 * 57.07833 * 12 3 2 25 25 H 1.08994 * 109.52307 * 62.92563 * 13 12 3 26 26 H 1.09003 * 109.52313 * 183.05370 * 13 12 3 27 27 H 1.08997 * 109.47731 * 177.59555 * 14 13 12 28 28 H 1.08997 * 109.48278 * 297.61811 * 14 13 12 29 29 H 1.09003 * 109.48077 * 301.17135 * 16 15 14 30 30 H 1.08998 * 109.48236 * 181.14096 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4799 2.1746 1.1922 5 1 0.8949 3.0712 1.0494 6 6 1.7144 1.6999 2.4652 7 7 2.4278 0.6089 2.6393 8 14 1.0196 2.6071 3.9430 9 1 1.4106 1.8980 5.1879 10 1 1.5567 3.9912 3.9717 11 1 -0.4615 2.6527 3.8443 12 6 3.5702 1.4444 0.0706 13 6 4.0720 2.8895 -0.0069 14 6 3.5490 3.5349 -1.2929 15 8 2.1214 3.4722 -1.3091 16 6 1.5954 2.1437 -1.2862 17 1 -0.3633 -1.0242 0.0848 18 1 -0.3633 0.5855 0.8446 19 1 -0.3633 0.4386 -0.9293 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 2.8564 0.1834 1.8802 23 1 3.8924 0.9965 1.0107 24 1 3.9745 0.8726 -0.7647 25 1 3.7080 3.4483 0.8552 26 1 5.1620 2.8968 -0.0119 27 1 3.8676 4.5765 -1.3325 28 1 3.9463 3.0002 -2.1556 29 1 1.9670 1.5907 -2.1488 30 1 0.5067 2.1832 -1.3210 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259864970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:11 Heat of formation + Delta-G solvation = -56.685106 kcal Electronic energy + Delta-G solvation = -12314.854034 eV Core-core repulsion = 10302.865545 eV Total energy + Delta-G solvation = -2011.988489 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.81419 -35.19833 -31.68980 -31.12074 -28.34005 -24.89609 -23.87040 -23.23909 -20.20169 -18.83940 -16.82668 -15.26777 -14.82819 -14.02740 -13.66626 -13.55107 -12.80229 -12.71752 -12.17725 -11.62499 -11.29415 -10.96792 -10.90871 -10.70360 -10.21964 -10.11611 -9.96571 -9.88396 -9.39968 -9.25069 -8.45930 -8.21697 -8.12887 -6.10495 -3.92540 3.48503 3.49285 3.67810 4.58190 4.80433 5.44201 5.73163 5.87514 5.92994 6.05430 6.10889 6.26035 6.33792 6.40411 6.46169 6.57103 6.66338 6.76399 6.86328 7.10480 7.20010 7.26068 7.40915 7.54694 7.63115 8.11615 8.39719 8.57597 8.98387 9.74394 11.13151 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.036675 B = 0.019830 C = 0.016606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.286459 B = 1411.649131 C = 1685.684572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.025 3.975 4 C -0.559 4.559 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.923 5.923 8 Si 1.058 2.942 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.290 1.290 12 C -0.118 4.118 13 C -0.139 4.139 14 C 0.069 3.931 15 O -0.382 6.382 16 C 0.083 3.917 17 H 0.026 0.974 18 H 0.070 0.930 19 H 0.032 0.968 20 H 0.020 0.980 21 H 0.078 0.922 22 H 0.278 0.722 23 H 0.076 0.924 24 H 0.023 0.977 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.018 0.982 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 1.655 -4.959 5.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.024 3.976 4 C -0.597 4.597 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.565 5.565 8 Si 0.888 3.112 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.216 1.216 12 C -0.157 4.157 13 C -0.176 4.176 14 C -0.008 4.008 15 O -0.300 6.300 16 C 0.006 3.994 17 H 0.045 0.955 18 H 0.089 0.911 19 H 0.051 0.949 20 H 0.039 0.961 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.041 0.959 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.421 1.742 -3.312 3.766 hybrid contribution 0.398 -0.185 -1.673 1.729 sum 0.819 1.557 -4.985 5.286 Atomic orbital electron populations 1.21619 0.96968 0.98925 1.01331 1.21689 0.95641 0.98710 0.99925 1.18932 0.91572 0.92616 0.94455 1.21679 1.34976 1.11872 0.91164 0.93094 1.25549 0.96226 0.96168 1.00093 1.70880 1.31614 1.18069 1.35952 0.83699 0.75989 0.75361 0.76175 1.21088 1.21680 1.21642 1.21799 0.98682 0.94705 1.00484 1.21981 0.97916 0.98590 0.99140 1.22373 0.82467 0.99652 0.96331 1.87809 1.19439 1.28067 1.94721 1.22596 0.97918 0.82619 0.96234 0.95508 0.91063 0.94883 0.96127 0.90337 0.90555 0.90582 0.95858 0.90171 0.93703 0.90630 0.95154 0.96409 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.31 37.16 0.35 -2.46 16 2 C -0.12 -2.79 4.66 -26.73 -0.12 -2.92 16 3 C 0.02 0.59 0.28 -155.52 -0.04 0.55 16 4 C -0.56 -14.89 5.16 -34.44 -0.18 -15.06 16 5 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 6 C 0.02 0.61 5.14 -17.82 -0.09 0.52 16 7 N -0.92 -26.33 12.36 55.43 0.68 -25.64 16 8 Si 1.06 24.98 29.90 -169.99 -5.08 19.90 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.12 -2.72 4.53 -26.55 -0.12 -2.84 16 13 C -0.14 -2.92 5.88 -26.59 -0.16 -3.07 16 14 C 0.07 1.33 6.84 37.21 0.25 1.59 16 15 O -0.38 -8.56 10.44 -35.23 -0.37 -8.93 16 16 C 0.08 1.82 5.14 37.20 0.19 2.01 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 18 H 0.07 1.68 6.96 -51.93 -0.36 1.32 16 19 H 0.03 0.64 6.82 -51.93 -0.35 0.28 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.08 1.99 5.17 -51.93 -0.27 1.72 16 22 H 0.28 7.73 3.31 -40.82 -0.14 7.60 16 23 H 0.08 1.92 5.39 -51.93 -0.28 1.64 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.89 7.39 -51.93 -0.38 1.50 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 LS Contribution 227.47 15.07 3.43 3.43 Total: -1.00 -28.31 227.47 -5.55 -33.86 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.29 Total: -0.94 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 0.08 Total: -21.68 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.68 Total: -25.64 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.37 Total: -8.93 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.31 -5.55 -33.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259864970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.825 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds