Wall clock time and date at job start Thu Apr 9 2020 13:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.05717 * 2 1 4 4 C 1.54272 * 110.03446 * 121.41709 * 2 1 3 5 5 H 1.09004 * 110.59428 * 24.15882 * 4 2 1 6 6 C 1.50703 * 110.48204 * 261.57477 * 4 2 1 7 7 H 1.07995 * 119.99929 * 280.34592 * 6 4 2 8 8 C 1.37874 * 119.99899 * 100.34952 * 6 4 2 9 9 N 1.31516 * 120.00365 * 359.97438 * 8 6 4 10 10 Si 1.86800 * 119.99931 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47193 * 269.99583 * 10 8 6 12 12 H 1.48502 * 109.47075 * 29.99607 * 10 8 6 13 13 H 1.48496 * 109.47312 * 149.99477 * 10 8 6 14 14 C 1.54881 * 104.19559 * 142.89672 * 4 2 1 15 15 C 1.54889 * 102.75158 * 322.05393 * 14 4 2 16 16 C 1.53872 * 110.03190 * 238.58487 * 2 1 3 17 17 H 1.08997 * 110.07421 * 0.02562 * 16 2 1 18 18 O 1.42897 * 110.03517 * 121.42934 * 16 2 1 19 19 H 1.09004 * 109.47198 * 298.58369 * 1 2 3 20 20 H 1.08996 * 109.47547 * 58.58357 * 1 2 3 21 21 H 1.09005 * 109.47227 * 178.58458 * 1 2 3 22 22 H 1.08991 * 109.47781 * 175.83018 * 3 2 1 23 23 H 1.09005 * 109.46682 * 295.83262 * 3 2 1 24 24 H 1.09005 * 109.47199 * 55.82352 * 3 2 1 25 25 H 0.97001 * 120.00504 * 179.97438 * 9 8 6 26 26 H 1.08997 * 110.75908 * 80.37133 * 14 4 2 27 27 H 1.09004 * 110.75251 * 203.56049 * 14 4 2 28 28 H 1.08991 * 110.48823 * 156.62023 * 15 14 4 29 29 H 1.09000 * 110.48824 * 279.14164 * 15 14 4 30 30 H 0.96696 * 113.99895 * 178.61780 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 1.2369 5 1 1.3152 -1.4659 1.5988 6 6 2.4335 0.2150 2.3272 7 1 3.3771 0.7384 2.2831 8 6 1.5719 0.4345 3.3809 9 7 0.4226 -0.2025 3.4344 10 14 2.0370 1.6369 4.7327 11 1 2.7692 0.9168 5.8053 12 1 2.9050 2.7025 4.1702 13 1 0.8066 2.2474 5.2971 14 6 3.3137 -1.5007 0.7191 15 6 2.8875 -1.9407 -0.7035 16 6 2.0570 -0.7535 -1.2337 17 1 1.2234 -1.1191 -1.8332 18 8 2.8824 0.1093 -2.0187 19 1 -0.3634 0.4917 0.9024 20 1 -0.3634 0.5356 -0.8770 21 1 -0.3634 -1.0274 -0.0254 22 1 3.1420 1.4271 0.0747 23 1 1.7586 1.9320 -0.9250 24 1 1.6370 1.9765 0.8502 25 1 -0.1834 -0.0484 4.1759 26 1 4.1710 -0.8290 0.6751 27 1 3.5344 -2.3660 1.3442 28 1 3.7637 -2.1037 -1.3309 29 1 2.2791 -2.8439 -0.6572 30 1 3.2627 -0.3142 -2.8004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372681.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:36 Heat of formation + Delta-G solvation = -73.797738 kcal Electronic energy + Delta-G solvation = -12083.133723 eV Core-core repulsion = 10070.403175 eV Total energy + Delta-G solvation = -2012.730549 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.60538 -34.75769 -32.13926 -31.09261 -27.74101 -25.89728 -24.12045 -22.84564 -19.81319 -17.73106 -16.26440 -15.93958 -14.77887 -14.45195 -14.01730 -12.62953 -12.44567 -12.27382 -11.83314 -11.56617 -11.38643 -10.96813 -10.85636 -10.66329 -10.46667 -10.13894 -9.93191 -9.38609 -9.23780 -9.14894 -8.87396 -8.69514 -8.32399 -5.95025 -3.93557 3.33818 3.41062 3.45079 4.49024 4.96004 5.30870 5.57575 5.65965 5.76625 6.21613 6.34100 6.40507 6.44120 6.61839 6.68948 6.80639 6.95583 7.01199 7.07647 7.20507 7.30812 7.54080 7.67044 7.72869 7.89254 8.02828 8.31329 8.56137 9.12315 9.66514 11.14244 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.053136 B = 0.014430 C = 0.014124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.825347 B = 1939.949940 C = 1981.953417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 C -0.089 4.089 4 C 0.046 3.954 5 H 0.062 0.938 6 C -0.494 4.494 7 H 0.053 0.947 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.884 3.116 11 H -0.282 1.282 12 H -0.274 1.274 13 H -0.288 1.288 14 C -0.115 4.115 15 C -0.156 4.156 16 C 0.102 3.898 17 H 0.039 0.961 18 O -0.559 6.559 19 H 0.073 0.927 20 H 0.025 0.975 21 H 0.038 0.962 22 H 0.044 0.956 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.259 0.741 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -1.408 -7.033 7.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 C -0.146 4.146 4 C 0.027 3.973 5 H 0.080 0.920 6 C -0.532 4.532 7 H 0.072 0.928 8 C -0.138 4.138 9 N -0.532 5.532 10 Si 0.712 3.288 11 H -0.208 1.208 12 H -0.199 1.199 13 H -0.214 1.214 14 C -0.153 4.153 15 C -0.194 4.194 16 C 0.043 3.957 17 H 0.057 0.943 18 O -0.363 6.363 19 H 0.092 0.908 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.587 -0.985 -6.438 6.703 hybrid contribution 0.319 0.127 0.310 0.463 sum 1.906 -0.858 -6.127 6.474 Atomic orbital electron populations 1.21742 0.95451 1.00075 1.00726 1.21459 0.94190 0.96682 0.93267 1.21239 1.00237 0.95042 0.98126 1.19767 0.92207 0.94480 0.90823 0.91996 1.21031 1.03310 1.23578 1.05313 0.92843 1.24959 0.95136 0.95918 0.97760 1.69920 1.09301 1.42314 1.31615 0.86725 0.77875 0.81710 0.82499 1.20835 1.19882 1.21374 1.22582 1.00731 0.99069 0.92939 1.23060 0.98918 0.97905 0.99491 1.22757 0.90592 0.89901 0.92409 0.94313 1.86673 1.68205 1.40964 1.40441 0.90836 0.95570 0.94268 0.93704 0.96019 0.92765 0.93149 0.92837 0.93474 0.93007 0.92183 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 8.16 37.16 0.30 -2.37 16 2 C -0.06 -1.24 0.86 -153.39 -0.13 -1.37 16 3 C -0.09 -2.04 6.45 37.16 0.24 -1.80 16 4 C 0.05 1.13 2.42 -90.11 -0.22 0.92 16 5 H 0.06 1.69 7.01 -51.93 -0.36 1.33 16 6 C -0.49 -13.39 6.11 -34.44 -0.21 -13.60 16 7 H 0.05 1.47 7.68 -52.49 -0.40 1.06 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.35 12.75 55.43 0.71 -24.64 16 10 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C -0.12 -2.50 6.32 -24.74 -0.16 -2.65 16 15 C -0.16 -2.84 6.56 -25.07 -0.16 -3.00 16 16 C 0.10 1.95 3.89 -25.61 -0.10 1.85 16 17 H 0.04 0.69 7.67 -51.93 -0.40 0.30 16 18 O -0.56 -10.06 11.44 -35.23 -0.40 -10.46 16 19 H 0.07 1.78 8.10 -51.93 -0.42 1.36 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.04 1.05 7.72 -51.93 -0.40 0.64 16 23 H 0.02 0.45 7.75 -51.93 -0.40 0.05 16 24 H 0.05 1.32 7.30 -51.93 -0.38 0.94 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.05 1.18 8.05 -51.93 -0.42 0.76 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.82 8.05 -51.93 -0.42 0.41 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.36 4.61 9.08 45.56 0.41 5.02 16 LS Contribution 240.55 15.07 3.63 3.63 Total: -1.00 -28.73 240.55 -5.64 -34.38 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.02 Total: 1.13 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -0.53 Total: -20.38 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.71 Total: -24.64 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.40 Total: -10.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.73 -5.64 -34.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372681.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.421 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds