Wall clock time and date at job start Thu Apr 9 2020 13:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47271 * 275.57715 * 3 2 1 5 5 H 1.48502 * 109.46864 * 35.58152 * 3 2 1 6 6 H 1.48500 * 109.47121 * 155.57714 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00270 * 354.64356 * 7 2 1 9 9 C 1.50702 * 120.00014 * 174.65121 * 7 2 1 10 10 C 1.52995 * 112.94018 * 85.09403 * 9 7 2 11 11 C 1.50697 * 109.47134 * 53.67614 * 10 9 7 12 12 N 1.34779 * 120.00073 * 186.21366 * 11 10 9 13 13 O 1.21276 * 120.00148 * 5.93494 * 11 10 9 14 14 C 1.53937 * 113.82871 * 216.75521 * 9 7 2 15 15 N 1.47967 * 86.18248 * 90.64658 * 14 9 7 16 16 C 1.47966 * 90.76148 * 24.68849 * 15 14 9 17 17 H 0.96996 * 119.99727 * 0.02562 * 1 2 3 18 18 H 1.08995 * 109.47308 * 293.67145 * 10 9 7 19 19 H 1.09012 * 109.46881 * 173.67430 * 10 9 7 20 20 H 0.96998 * 120.00702 * 185.28082 * 12 11 10 21 21 H 0.97009 * 119.99818 * 5.28378 * 12 11 10 22 22 H 1.08998 * 113.75700 * 204.96405 * 14 9 7 23 23 H 1.09001 * 113.75671 * 336.33117 * 14 9 7 24 24 H 1.00895 * 110.99971 * 271.79843 * 15 14 9 25 25 H 1.08999 * 113.76103 * 220.99274 * 16 15 14 26 26 H 1.09001 * 113.75689 * 89.62568 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3789 2.1144 -1.3934 5 1 1.5105 2.6157 0.8147 6 1 3.6007 1.4090 0.5789 7 6 2.0045 -1.1941 -0.0005 8 1 1.4681 -2.1273 0.0864 9 6 3.5066 -1.1969 -0.1222 10 6 4.2141 -1.0129 1.2218 11 6 3.7102 -2.0427 2.1999 12 7 4.1003 -1.9952 3.4891 13 8 2.9497 -2.9111 1.8281 14 6 4.0605 -2.3640 -0.9593 15 7 3.9435 -1.4559 -2.1217 16 6 4.0398 -0.2757 -1.2344 17 1 -0.4849 0.8400 -0.0004 18 1 4.0081 -0.0144 1.6071 19 1 5.2888 -1.1356 1.0865 20 1 3.8384 -2.7004 4.1014 21 1 4.6430 -1.2557 3.8047 22 1 5.0880 -2.6321 -0.7132 23 1 3.3945 -3.2256 -1.0063 24 1 3.0275 -1.5201 -2.5398 25 1 3.3572 0.5311 -1.5011 26 1 5.0612 0.0669 -1.0687 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260601711.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:46 Heat of formation + Delta-G solvation = -27.904163 kcal Electronic energy + Delta-G solvation = -11757.503196 eV Core-core repulsion = 9643.222398 eV Total energy + Delta-G solvation = -2114.280797 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08845 -39.36616 -34.46236 -34.36598 -31.79858 -27.80663 -26.86116 -24.96096 -21.51039 -20.58138 -18.52062 -17.72230 -17.55018 -17.28171 -16.13735 -15.61733 -14.98690 -14.77455 -14.55714 -14.00433 -13.53450 -13.40289 -12.76999 -12.06367 -11.86102 -11.82729 -11.36432 -11.09294 -10.65567 -10.46404 -10.32615 -9.25105 -8.24445 -6.28206 1.33160 1.35165 1.48370 2.03085 2.34608 2.91486 3.03628 3.47740 3.94587 4.21148 4.45806 4.59180 4.67431 4.78678 4.83404 5.01395 5.14879 5.30355 5.50846 5.72204 6.16197 6.37255 6.50388 6.76453 6.81923 7.34417 7.71468 8.92685 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.033691 B = 0.021960 C = 0.017908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.893476 B = 1274.750522 C = 1563.164133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.308 1.308 6 H -0.206 1.206 7 C -0.473 4.473 8 H 0.021 0.979 9 C -0.002 4.002 10 C -0.138 4.138 11 C 0.514 3.486 12 N -0.850 5.850 13 O -0.573 6.573 14 C 0.033 3.967 15 N -0.652 5.652 16 C 0.002 3.998 17 H 0.262 0.738 18 H 0.092 0.908 19 H 0.116 0.884 20 H 0.400 0.600 21 H 0.414 0.586 22 H 0.102 0.898 23 H 0.039 0.961 24 H 0.330 0.670 25 H 0.048 0.952 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 2.313 4.858 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.237 1.237 6 H -0.128 1.128 7 C -0.511 4.511 8 H 0.040 0.960 9 C -0.005 4.005 10 C -0.179 4.179 11 C 0.300 3.700 12 N -0.416 5.416 13 O -0.451 6.451 14 C -0.097 4.097 15 N -0.277 5.277 16 C -0.127 4.127 17 H 0.071 0.929 18 H 0.110 0.890 19 H 0.134 0.866 20 H 0.230 0.770 21 H 0.244 0.756 22 H 0.120 0.880 23 H 0.058 0.942 24 H 0.144 0.856 25 H 0.066 0.934 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.184 1.866 3.978 13.897 hybrid contribution -1.470 0.646 0.982 1.882 sum 11.714 2.511 4.961 12.967 Atomic orbital electron populations 1.70103 1.08712 1.27725 1.53054 1.26035 0.95448 1.03311 0.94650 0.86067 0.81106 0.77887 0.77876 1.20394 1.23687 1.12820 1.20655 0.89973 0.92385 1.48083 0.96043 1.21078 0.93959 0.93931 0.91484 1.22102 1.01568 0.98285 0.95898 1.20969 0.79301 0.85701 0.83982 1.43747 1.57645 1.29952 1.10207 1.90711 1.35309 1.39627 1.79446 1.23556 0.99908 0.95424 0.90829 1.65211 1.35181 1.04130 1.23146 1.24084 1.00981 0.94000 0.93655 0.92935 0.88996 0.86635 0.76975 0.75570 0.87981 0.94239 0.85620 0.93394 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.83 13.96 21.45 0.30 -60.53 15 2 C 0.00 0.06 5.44 84.65 0.46 0.52 15 3 Si 0.94 42.02 23.64 68.60 1.62 43.64 15 4 H -0.28 -12.11 6.81 99.48 0.68 -11.44 15 5 H -0.31 -14.15 7.11 99.48 0.71 -13.44 15 6 H -0.21 -7.41 4.82 99.48 0.48 -6.93 15 7 C -0.47 -26.83 7.14 25.60 0.18 -26.64 15 8 H 0.02 1.46 7.53 -2.91 -0.02 1.44 15 9 C 0.00 -0.11 0.09 -52.28 0.00 -0.11 15 10 C -0.14 -4.81 4.88 29.85 0.15 -4.67 15 11 C 0.51 19.58 7.74 87.66 0.68 20.26 15 12 N -0.85 -21.84 8.87 -173.54 -1.54 -23.38 15 13 O -0.57 -28.67 15.03 -3.02 -0.05 -28.72 15 14 C 0.03 1.34 7.64 86.41 0.66 2.00 15 15 N -0.65 -26.32 8.56 -523.26 -4.48 -30.79 15 16 C 0.00 0.09 6.24 86.41 0.54 0.63 15 17 H 0.26 15.66 8.31 -92.71 -0.77 14.89 15 18 H 0.09 3.06 5.70 -2.39 -0.01 3.04 15 19 H 0.12 3.01 8.05 -2.38 -0.02 2.99 15 20 H 0.40 9.32 8.93 -92.71 -0.83 8.49 15 21 H 0.41 7.20 8.83 -92.70 -0.82 6.38 15 22 H 0.10 3.51 8.03 -2.39 -0.02 3.49 15 23 H 0.04 1.82 8.09 -2.39 -0.02 1.80 15 24 H 0.33 14.48 8.63 -89.70 -0.77 13.70 15 25 H 0.05 2.02 3.74 -2.39 -0.01 2.01 15 26 H 0.12 3.62 8.10 -2.39 -0.02 3.60 15 Total: -1.00 -74.81 211.91 -2.93 -77.74 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -1.45 Total: 30.05 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 2.66 Total: -8.00 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.72 Total: -114.70 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.62 Total: 43.64 kcal Total: -74.81 -2.93 -77.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601711.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.833 kcal (2) G-P(sol) polarization free energy of solvation -74.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds