Wall clock time and date at job start Thu Apr 9 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.83800 * 2 1 4 4 C 1.54796 * 110.94827 * 123.73480 * 2 1 3 5 5 C 1.51810 * 102.22948 * 94.14975 * 4 2 1 6 6 O 1.21300 * 126.03502 * 194.80502 * 5 4 2 7 7 N 1.34590 * 107.92553 * 14.81768 * 5 4 2 8 8 C 1.37092 * 123.52868 * 181.59572 * 7 5 4 9 9 H 1.08005 * 120.00118 * 4.73993 * 8 7 5 10 10 C 1.38955 * 120.00075 * 184.46823 * 8 7 5 11 11 N 1.31405 * 119.99937 * 353.72928 * 10 8 7 12 12 Si 1.86800 * 120.00068 * 173.73539 * 10 8 7 13 13 H 1.48501 * 109.47097 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47316 * 119.99453 * 12 10 8 15 15 H 1.48497 * 109.46842 * 239.99871 * 12 10 8 16 16 N 1.36339 * 112.94493 * 1.86865 * 7 5 4 17 17 H 1.09008 * 109.47111 * 296.26702 * 1 2 3 18 18 H 1.08996 * 109.47207 * 56.26330 * 1 2 3 19 19 H 1.08994 * 109.47159 * 176.26387 * 1 2 3 20 20 H 1.09004 * 109.46654 * 183.73378 * 3 2 1 21 21 H 1.08998 * 109.47387 * 303.73130 * 3 2 1 22 22 H 1.08997 * 109.47093 * 63.74051 * 3 2 1 23 23 H 1.08999 * 110.85274 * 335.95858 * 4 2 1 24 24 H 1.09001 * 110.85103 * 212.32948 * 4 2 1 25 25 H 0.97004 * 120.00256 * 180.02562 * 11 10 8 26 26 H 1.00899 * 111.00253 * 102.98322 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0743 1.4300 0.0000 4 6 2.0834 -0.8028 1.2022 5 6 2.2987 -2.1789 0.5983 6 8 2.4841 -3.2074 1.2140 7 7 2.2476 -2.0561 -0.7410 8 6 2.3717 -3.1142 -1.6038 9 1 2.4424 -4.1204 -1.2177 10 6 2.4009 -2.8927 -2.9753 11 7 2.1864 -1.6867 -3.4507 12 14 2.7449 -4.3095 -4.1431 13 1 2.9516 -5.5556 -3.3622 14 1 1.5910 -4.4858 -5.0610 15 1 3.9661 -4.0134 -4.9343 16 7 2.0654 -0.7683 -1.1501 17 1 -0.3634 0.4548 0.9216 18 1 -0.3633 0.5707 -0.8546 19 1 -0.3633 -1.0254 -0.0670 20 1 3.1619 1.4046 -0.0669 21 1 1.6702 1.9726 -0.8546 22 1 1.7786 1.9312 0.9216 23 1 1.3534 -0.8437 2.0106 24 1 3.0260 -0.3801 1.5502 25 1 2.2064 -1.5321 -4.4082 26 1 2.9299 -0.3692 -1.4840 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260665042.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:47 Heat of formation + Delta-G solvation = 7.443665 kcal Electronic energy + Delta-G solvation = -11688.084803 eV Core-core repulsion = 9575.336802 eV Total energy + Delta-G solvation = -2112.748001 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.80635 -35.79906 -34.09678 -31.64015 -28.01542 -27.69894 -26.84890 -24.09518 -19.73250 -19.12172 -17.66759 -15.57852 -15.13025 -14.29589 -13.96828 -13.85732 -13.30303 -12.84063 -12.43808 -12.05180 -11.55116 -11.43257 -11.13431 -11.08385 -10.73876 -10.53461 -10.36984 -10.29205 -9.61116 -8.68806 -8.22273 -7.06093 -6.19652 -3.76077 3.16189 3.26938 3.33255 3.83830 4.06155 4.50245 5.11248 5.24156 5.33887 5.46151 5.50419 5.88359 5.94393 6.10559 6.21337 6.27700 6.38673 6.51713 6.79359 6.83503 7.53171 7.94481 8.10695 8.74383 9.13845 9.63569 10.12547 10.80035 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.049786 B = 0.015789 C = 0.013122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.268753 B = 1772.957219 C = 2133.378988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.072 3.928 3 C -0.140 4.140 4 C -0.175 4.175 5 C 0.412 3.588 6 O -0.591 6.591 7 N -0.282 5.282 8 C -0.313 4.313 9 H 0.109 0.891 10 C 0.041 3.959 11 N -0.837 5.837 12 Si 0.923 3.077 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.281 1.281 16 N -0.390 5.390 17 H 0.050 0.950 18 H 0.061 0.939 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.263 0.737 26 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 6.576 2.038 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.019 4.019 3 C -0.198 4.198 4 C -0.217 4.217 5 C 0.198 3.802 6 O -0.476 6.476 7 N -0.089 5.089 8 C -0.440 4.440 9 H 0.127 0.873 10 C -0.167 4.167 11 N -0.473 5.473 12 Si 0.749 3.251 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.206 1.206 16 N -0.117 5.117 17 H 0.069 0.931 18 H 0.080 0.920 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.355 5.990 1.731 6.381 hybrid contribution 0.896 -0.312 -0.152 0.961 sum -0.459 5.678 1.578 5.911 Atomic orbital electron populations 1.21541 0.92978 1.02498 1.00534 1.22348 0.96749 0.93189 0.89588 1.21889 1.00562 0.95127 1.02219 1.22933 1.02252 0.97337 0.99200 1.20689 0.86296 0.90143 0.83024 1.90519 1.57737 1.33725 1.65579 1.43420 1.59586 1.01656 1.04206 1.19666 1.51039 0.86614 0.86686 0.87337 1.25316 0.96436 0.97530 0.97374 1.70060 1.44093 1.19934 1.13173 0.85926 0.77985 0.81176 0.80026 1.19261 1.20621 1.20644 1.63055 1.32116 0.91157 1.25339 0.93076 0.92021 0.92278 0.92712 0.91518 0.91980 0.89393 0.89958 0.92643 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.94 37.16 0.33 -1.73 15 2 C 0.07 1.35 1.29 -129.87 -0.17 1.19 15 3 C -0.14 -2.02 8.61 37.16 0.32 -1.70 15 4 C -0.18 -3.48 6.21 -26.39 -0.16 -3.65 15 5 C 0.41 10.82 8.10 -10.52 -0.09 10.74 15 6 O -0.59 -17.56 17.62 5.54 0.10 -17.46 15 7 N -0.28 -7.58 3.45 -10.64 -0.04 -7.61 15 8 C -0.31 -8.95 9.92 -14.93 -0.15 -9.10 15 9 H 0.11 3.20 7.68 -52.48 -0.40 2.80 15 10 C 0.04 1.08 5.49 -17.47 -0.10 0.99 15 11 N -0.84 -22.37 11.44 55.50 0.64 -21.73 15 12 Si 0.92 20.69 29.56 -169.99 -5.02 15.67 15 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 16 N -0.39 -9.14 5.15 2.24 0.01 -9.13 15 17 H 0.05 0.73 8.14 -51.92 -0.42 0.31 15 18 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 19 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 20 H 0.05 0.77 8.05 -51.93 -0.42 0.35 15 21 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.09 1.60 7.91 -51.93 -0.41 1.19 15 24 H 0.08 1.48 7.91 -51.93 -0.41 1.07 15 25 H 0.26 6.62 8.31 -40.82 -0.34 6.29 15 26 H 0.33 7.78 8.18 -181.55 -1.49 6.30 15 LS Contribution 225.84 15.07 3.40 3.40 Total: -1.00 -31.53 225.84 -5.30 -36.83 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.38 Total: 3.30 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.01 Total: -3.27 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.61 Total: -38.47 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.10 Total: -17.46 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -31.53 -5.30 -36.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260665042.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.273 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds