Wall clock time and date at job start Thu Apr 9 2020 13:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.47099 * 2 1 4 4 C 1.48311 * 110.94654 * 300.87302 * 3 2 1 5 5 C 1.54785 * 101.79968 * 148.36888 * 4 3 2 6 6 C 1.51808 * 102.23483 * 335.79398 * 5 4 3 7 7 O 1.21287 * 126.03861 * 194.83882 * 6 5 4 8 8 N 1.34596 * 107.91975 * 14.82668 * 6 5 4 9 9 C 1.37091 * 123.52164 * 181.59239 * 8 6 5 10 10 H 1.08001 * 119.99417 * 212.73726 * 9 8 6 11 11 C 1.38953 * 120.00137 * 33.02144 * 9 8 6 12 12 N 1.31405 * 120.00429 * 23.63155 * 11 9 8 13 13 Si 1.86806 * 119.99646 * 203.62921 * 11 9 8 14 14 H 1.48503 * 109.46519 * 94.99125 * 13 11 9 15 15 H 1.48493 * 109.47136 * 214.98654 * 13 11 9 16 16 H 1.48499 * 109.47295 * 334.99112 * 13 11 9 17 17 H 1.08997 * 109.46833 * 307.56828 * 1 2 3 18 18 H 1.09001 * 109.47102 * 67.57060 * 1 2 3 19 19 H 1.08996 * 109.46577 * 187.56619 * 1 2 3 20 20 H 1.09007 * 109.47476 * 240.00389 * 2 1 3 21 21 H 1.08994 * 109.47397 * 120.00334 * 2 1 3 22 22 H 1.09006 * 111.15896 * 30.16839 * 4 3 2 23 23 H 1.08995 * 110.83455 * 266.42899 * 4 3 2 24 24 H 1.09004 * 110.85044 * 217.60904 * 5 4 3 25 25 H 1.09001 * 111.02407 * 94.06250 * 5 4 3 26 26 H 0.96996 * 120.00230 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5263 2.1218 -1.1888 5 6 1.4027 3.5634 -0.6390 6 6 1.2407 3.3264 0.8517 7 8 0.8597 4.1401 1.6664 8 7 1.5943 2.0535 1.1095 9 6 1.5380 1.4901 2.3580 10 1 2.2600 0.7399 2.6448 11 6 0.5485 1.8801 3.2522 12 7 -0.5725 2.4004 2.8059 13 14 0.8120 1.6645 5.0890 14 1 1.3357 2.9288 5.6656 15 1 -0.4793 1.3223 5.7375 16 1 1.7890 0.5711 5.3240 17 1 -0.3633 0.6266 0.8145 18 1 -0.3633 0.3921 -0.9499 19 1 -0.3632 -1.0187 0.1353 20 1 1.8934 -0.5138 -0.8901 21 1 1.8934 -0.5138 0.8899 22 1 0.5564 1.7433 -1.5118 23 1 2.2508 2.0755 -2.0018 24 1 0.5248 4.0616 -1.0503 25 1 2.3052 4.1391 -0.8445 26 1 -1.2631 2.6730 3.4302 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260850633.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:49 Heat of formation + Delta-G solvation = 20.267787 kcal Electronic energy + Delta-G solvation = -11972.293625 eV Core-core repulsion = 9860.101720 eV Total energy + Delta-G solvation = -2112.191905 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.71135 -35.75339 -33.09280 -31.70737 -30.39208 -27.15687 -24.83844 -22.76677 -20.57588 -19.84631 -16.63695 -15.70412 -15.24802 -14.42160 -14.23362 -13.43645 -13.00241 -12.80767 -12.27905 -11.88697 -11.60076 -11.24936 -10.98038 -10.91735 -10.66257 -10.58445 -10.24757 -10.09221 -9.46208 -8.42248 -8.03923 -6.72482 -6.15597 -3.86953 3.28347 3.35889 3.38142 3.99072 4.34549 4.61336 5.15943 5.42465 5.51514 5.64309 5.82883 5.96743 6.08537 6.14835 6.26642 6.43660 6.56091 6.69409 6.95857 7.22379 7.33894 7.58360 8.24056 8.92342 9.32372 9.67851 10.36064 10.85545 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.019396 C = 0.015958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.214266 B = 1443.283127 C = 1754.194940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.029 3.971 3 N -0.300 5.300 4 C 0.009 3.991 5 C -0.161 4.161 6 C 0.473 3.527 7 O -0.531 6.531 8 N -0.308 5.308 9 C -0.336 4.336 10 H 0.088 0.912 11 C 0.059 3.941 12 N -0.822 5.822 13 Si 0.921 3.079 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.271 1.271 17 H 0.095 0.905 18 H 0.039 0.961 19 H 0.045 0.955 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -3.536 -5.740 7.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.100 4.100 3 N -0.115 5.115 4 C -0.119 4.119 5 C -0.202 4.202 6 C 0.259 3.741 7 O -0.408 6.408 8 N -0.117 5.117 9 C -0.464 4.464 10 H 0.106 0.894 11 C -0.153 4.153 12 N -0.455 5.455 13 Si 0.747 3.253 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.196 1.196 17 H 0.114 0.886 18 H 0.058 0.942 19 H 0.064 0.936 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.198 -3.085 -5.215 6.445 hybrid contribution -0.953 -0.261 0.566 1.139 sum 1.244 -3.345 -4.649 5.861 Atomic orbital electron populations 1.22362 0.97513 1.02008 1.02748 1.22554 0.94107 0.91612 1.01701 1.66803 1.48639 1.00409 0.95675 1.23704 0.99741 0.93692 0.94788 1.22550 1.02858 0.96873 0.97914 1.19946 0.82505 0.82675 0.89023 1.90537 1.48335 1.48360 1.53535 1.43551 1.58822 1.07537 1.01838 1.19005 1.13371 1.27763 0.86283 0.89438 1.25244 0.93276 0.96440 1.00342 1.69890 1.03861 1.36022 1.35766 0.86056 0.77536 0.78609 0.83083 1.20248 1.21251 1.19560 0.88594 0.94195 0.93593 0.91775 0.89955 0.92478 0.89644 0.90203 0.89381 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.77 9.30 37.16 0.35 -3.42 15 2 C 0.03 0.56 5.77 -3.82 -0.02 0.54 15 3 N -0.30 -6.56 5.72 -111.67 -0.64 -7.20 15 4 C 0.01 0.16 6.84 -2.10 -0.01 0.14 15 5 C -0.16 -3.30 7.11 -26.40 -0.19 -3.48 15 6 C 0.47 12.82 7.42 -10.52 -0.08 12.75 15 7 O -0.53 -16.53 15.42 5.55 0.09 -16.44 15 8 N -0.31 -8.06 2.40 -10.64 -0.03 -8.09 15 9 C -0.34 -9.27 7.55 -14.94 -0.11 -9.38 15 10 H 0.09 2.34 7.58 -52.49 -0.40 1.94 15 11 C 0.06 1.65 4.61 -17.47 -0.08 1.57 15 12 N -0.82 -24.19 11.15 55.50 0.62 -23.57 15 13 Si 0.92 21.77 29.62 -169.99 -5.03 16.74 15 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 17 H 0.10 2.39 6.37 -51.93 -0.33 2.06 15 18 H 0.04 0.73 6.31 -51.93 -0.33 0.41 15 19 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.08 1.68 7.12 -51.93 -0.37 1.31 15 22 H 0.06 1.03 5.69 -51.93 -0.30 0.74 15 23 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.08 1.53 8.14 -51.93 -0.42 1.10 15 25 H 0.09 1.61 8.14 -51.93 -0.42 1.19 15 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 216.32 15.07 3.26 3.26 Total: -1.00 -32.15 216.32 -4.85 -37.01 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -2.97 Total: -0.42 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.15 Total: -1.29 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.05 Total: -38.86 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -32.15 -4.85 -37.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850633.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.276 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds