Wall clock time and date at job start Thu Apr 9 2020 13:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00152 * 2 1 4 4 H 1.48510 * 109.47150 * 240.00418 * 3 2 1 5 5 H 1.48498 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47418 * 120.00053 * 3 2 1 7 7 C 1.37880 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00185 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47379 * 180.02562 * 9 7 2 11 11 C 1.46834 * 110.92846 * 294.76639 * 10 9 7 12 12 C 1.53410 * 108.72608 * 178.09284 * 11 10 9 13 13 C 1.53311 * 107.99992 * 294.04964 * 12 11 10 14 14 C 1.50492 * 109.06603 * 45.79084 * 13 12 11 15 15 O 1.21278 * 118.68996 * 163.77453 * 14 13 12 16 16 N 1.33491 * 122.62084 * 343.74268 * 14 13 12 17 17 H 0.97000 * 120.00016 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.46682 * 60.00433 * 9 7 2 19 19 H 1.09004 * 109.47002 * 300.00927 * 9 7 2 20 20 H 1.09000 * 109.75312 * 58.24798 * 11 10 9 21 21 H 1.09003 * 109.62681 * 297.85363 * 11 10 9 22 22 H 1.09002 * 109.75372 * 174.42424 * 12 11 10 23 23 H 1.08996 * 109.75748 * 53.67832 * 12 11 10 24 24 H 1.08996 * 109.54483 * 285.91351 * 13 12 11 25 25 H 1.09003 * 109.60709 * 165.70223 * 13 12 11 26 26 H 0.97001 * 117.59262 * 182.80083 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9831 -3.6410 -1.2459 12 6 3.9935 -4.7931 -1.1723 13 6 5.0025 -4.4683 -0.0647 14 6 4.2589 -3.9891 1.1527 15 8 4.8385 -3.9669 2.2177 16 7 2.9869 -3.5868 1.1069 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8904 19 1 0.6246 -2.5571 0.8896 20 1 3.5140 -2.6969 -1.3680 21 1 2.3139 -3.7958 -2.0922 22 1 4.5119 -4.8899 -2.1263 23 1 3.4755 -5.7230 -0.9378 24 1 5.6818 -3.6879 -0.4076 25 1 5.5722 -5.3635 0.1851 26 1 2.5913 -3.2530 1.9273 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260869034.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:53 Heat of formation + Delta-G solvation = -37.488103 kcal Electronic energy + Delta-G solvation = -11456.189015 eV Core-core repulsion = 9341.492627 eV Total energy + Delta-G solvation = -2114.696388 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.45214 -38.51527 -35.22214 -34.29139 -32.32093 -28.94559 -26.69479 -24.30113 -23.80311 -20.11717 -18.97861 -17.94528 -17.70100 -16.78408 -16.41471 -15.29125 -15.00701 -14.86589 -14.54554 -13.81663 -13.75992 -13.06783 -12.92901 -12.53418 -12.34914 -12.08664 -11.81906 -11.80960 -11.25208 -10.78908 -10.69043 -8.73685 -8.21252 -6.44771 1.33472 1.35623 1.42840 1.62329 2.17458 2.31869 3.02068 3.30898 3.91798 4.01389 4.15697 4.52656 4.73834 4.83597 4.93608 5.00104 5.12552 5.20747 5.33191 5.50956 5.62623 5.89054 6.14946 6.69063 6.97823 7.26205 7.55280 8.77100 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.048831 B = 0.012986 C = 0.012109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.269050 B = 2155.626743 C = 2311.826581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.050 0.950 9 C 0.172 3.828 10 N -0.302 5.302 11 C 0.023 3.977 12 C -0.109 4.109 13 C -0.129 4.129 14 C 0.494 3.506 15 O -0.621 6.621 16 N -0.538 5.538 17 H 0.268 0.732 18 H 0.042 0.958 19 H 0.020 0.980 20 H 0.037 0.963 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 -6.575 -4.843 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.602 4.602 8 H 0.068 0.932 9 C 0.045 3.955 10 N -0.120 5.120 11 C -0.105 4.105 12 C -0.146 4.146 13 C -0.168 4.168 14 C 0.282 3.718 15 O -0.503 6.503 16 N -0.276 5.276 17 H 0.077 0.923 18 H 0.060 0.940 19 H 0.038 0.962 20 H 0.056 0.944 21 H 0.122 0.878 22 H 0.132 0.868 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.120 -6.967 -4.481 10.299 hybrid contribution 0.175 2.176 0.435 2.226 sum 6.295 -4.791 -4.045 8.885 Atomic orbital electron populations 1.70006 1.07234 1.28263 1.50012 1.25687 0.95594 1.02529 0.94219 0.85686 0.78515 0.79247 0.78720 1.19222 1.20340 1.20522 1.21750 0.92994 0.92784 1.52667 0.93178 1.20129 0.91190 0.86230 0.97912 1.64179 1.10460 1.42222 0.95183 1.22739 0.97300 0.98681 0.91761 1.21797 0.95247 0.97979 0.99614 1.21801 0.98740 1.04297 0.91998 1.21105 0.80633 0.78042 0.92006 1.90671 1.66095 1.60369 1.33189 1.45327 1.11017 1.61914 1.09313 0.92260 0.93991 0.96218 0.94426 0.87847 0.86754 0.89841 0.87689 0.86215 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.78 13.29 21.45 0.28 -51.49 15 2 C 0.02 1.12 5.46 84.66 0.46 1.58 15 3 Si 0.95 42.89 29.54 68.60 2.03 44.92 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 7 C -0.56 -29.62 7.96 25.60 0.20 -29.41 15 8 H 0.05 2.66 6.95 -2.91 -0.02 2.64 15 9 C 0.17 8.28 5.09 85.56 0.44 8.72 15 10 N -0.30 -12.00 5.27 -517.35 -2.73 -14.73 15 11 C 0.02 0.76 5.40 86.45 0.47 1.22 15 12 C -0.11 -2.58 6.26 30.84 0.19 -2.38 15 13 C -0.13 -3.49 6.16 29.89 0.18 -3.31 15 14 C 0.49 19.05 7.73 87.79 0.68 19.73 15 15 O -0.62 -28.21 17.81 -3.02 -0.05 -28.27 15 16 N -0.54 -21.91 4.92 -175.15 -0.86 -22.77 15 17 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 18 H 0.04 2.11 8.13 -2.39 -0.02 2.09 15 19 H 0.02 1.03 8.13 -2.38 -0.02 1.01 15 20 H 0.04 1.39 6.76 -2.39 -0.02 1.37 15 21 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 22 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.40 17.11 8.43 -216.12 -1.82 15.29 15 Total: -1.00 -63.04 223.64 0.65 -62.39 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.64 Total: 13.80 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 2.62 Total: -3.86 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.30 Total: -88.99 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -63.04 0.65 -62.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869034.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.907 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds