Wall clock time and date at job start Thu Apr 9 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34203 * 119.45609 * 2 1 4 4 O 1.21276 * 118.72556 * 1.53866 * 3 2 1 5 5 C 1.50232 * 122.51940 * 181.82462 * 3 2 1 6 6 C 1.52983 * 110.37287 * 338.66466 * 5 3 2 7 7 C 1.53466 * 108.78506 * 50.46075 * 6 5 3 8 8 N 1.40212 * 119.36950 * 179.72060 * 2 1 3 9 9 C 1.36941 * 120.63354 * 345.88868 * 8 2 1 10 10 H 1.08006 * 119.99706 * 333.75037 * 9 8 2 11 11 C 1.38803 * 120.00521 * 153.48268 * 9 8 2 12 12 N 1.31621 * 120.00051 * 347.30320 * 11 9 8 13 13 Si 1.86802 * 120.00340 * 167.30681 * 11 9 8 14 14 H 1.48496 * 109.47117 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47119 * 119.99846 * 13 11 9 16 16 H 1.48501 * 109.46935 * 239.99510 * 13 11 9 17 17 H 1.08990 * 109.47268 * 266.25545 * 1 2 3 18 18 H 1.08998 * 109.47209 * 26.26258 * 1 2 3 19 19 H 1.09007 * 109.46698 * 146.25339 * 1 2 3 20 20 H 1.09006 * 109.31702 * 218.38804 * 5 3 2 21 21 H 1.09000 * 109.17133 * 98.84945 * 5 3 2 22 22 H 1.08997 * 109.58477 * 290.67119 * 6 5 3 23 23 H 1.08996 * 109.70281 * 170.32601 * 6 5 3 24 24 H 1.09000 * 109.79020 * 178.63605 * 7 6 5 25 25 H 1.08996 * 109.84078 * 57.81623 * 7 6 5 26 26 H 0.96999 * 120.00527 * 185.03283 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1249 1.1685 0.0000 4 8 1.4859 2.1989 0.0286 5 6 3.6245 1.2491 -0.0403 6 6 4.2417 -0.0642 0.4440 7 6 3.5875 -1.2270 -0.3144 8 7 2.1526 -1.2219 0.0060 9 6 1.4990 -2.3890 0.2989 10 1 0.6138 -2.3716 0.9176 11 6 1.9707 -3.5938 -0.2037 12 7 2.8825 -3.5990 -1.1529 13 14 1.3114 -5.2079 0.4669 14 1 0.3025 -4.9308 1.5207 15 1 0.6798 -5.9798 -0.6332 16 1 2.4285 -5.9961 1.0467 17 1 -0.3633 -0.0671 1.0254 18 1 -0.3633 0.9216 -0.4547 19 1 -0.3633 -0.8546 -0.5709 20 1 3.9593 2.0635 0.6023 21 1 3.9452 1.4424 -1.0640 22 1 4.0636 -0.1792 1.5132 23 1 5.3144 -0.0594 0.2508 24 1 4.0329 -2.1705 0.0011 25 1 3.7266 -1.0938 -1.3872 26 1 3.1591 -4.4372 -1.5552 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260937406.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:04 Heat of formation + Delta-G solvation = 16.392358 kcal Electronic energy + Delta-G solvation = -11675.270170 eV Core-core repulsion = 9562.910214 eV Total energy + Delta-G solvation = -2112.359956 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.12291 -35.97809 -33.26446 -32.72003 -29.46782 -26.58922 -26.01389 -22.86733 -21.63729 -18.11669 -16.99324 -16.13552 -15.37188 -14.89078 -14.39009 -13.53761 -13.20273 -12.87930 -12.73149 -11.85786 -11.68984 -11.41858 -11.23360 -11.08369 -10.44073 -10.33982 -10.23222 -10.00286 -9.17614 -8.83153 -8.52713 -6.49179 -6.16142 -3.51571 3.16992 3.24655 3.30121 3.49691 3.53572 4.31387 5.10130 5.12090 5.61237 5.70726 5.76975 6.20882 6.26349 6.28340 6.40506 6.50047 6.50641 6.77153 7.15304 7.33363 7.41745 7.55649 8.34458 8.92723 9.00404 9.74502 10.18294 10.92906 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.057386 B = 0.014847 C = 0.012528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.807265 B = 1885.414162 C = 2234.452371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.388 5.388 3 C 0.483 3.517 4 O -0.603 6.603 5 C -0.123 4.123 6 C -0.150 4.150 7 C 0.187 3.813 8 N -0.410 5.410 9 C -0.247 4.247 10 H 0.078 0.922 11 C 0.010 3.990 12 N -0.895 5.895 13 Si 0.925 3.075 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.283 1.283 17 H 0.047 0.953 18 H 0.069 0.931 19 H 0.073 0.927 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.031 0.969 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 1.578 1.878 2.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.198 5.198 3 C 0.270 3.730 4 O -0.487 6.487 5 C -0.163 4.163 6 C -0.190 4.190 7 C 0.062 3.938 8 N -0.225 5.225 9 C -0.378 4.378 10 H 0.096 0.904 11 C -0.193 4.193 12 N -0.538 5.538 13 Si 0.753 3.247 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.209 1.209 17 H 0.066 0.934 18 H 0.087 0.913 19 H 0.092 0.908 20 H 0.103 0.897 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.120 0.880 25 H 0.049 0.951 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.242 1.992 1.851 2.990 hybrid contribution -0.366 -0.927 -0.047 0.997 sum 0.877 1.066 1.803 2.271 Atomic orbital electron populations 1.21538 0.80235 1.02313 1.01159 1.48069 1.04296 1.00726 1.66675 1.20067 0.90540 0.82179 0.80259 1.90593 1.68705 1.32717 1.56645 1.21444 0.92180 0.99695 1.03007 1.22239 0.99502 0.95741 1.01478 1.21191 0.79304 0.97109 0.96222 1.44822 1.02353 0.93578 1.81787 1.19328 1.13326 0.81216 1.23923 0.90393 1.25306 0.98903 0.98887 0.96159 1.69985 1.31904 1.26845 1.25086 0.85853 0.78479 0.81969 0.78364 1.19793 1.21178 1.20933 0.93436 0.91268 0.90807 0.89739 0.89690 0.91703 0.91433 0.87977 0.95107 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 9.55 59.85 0.57 2.50 15 2 N -0.39 -9.28 3.86 -67.40 -0.26 -9.54 15 3 C 0.48 11.13 7.56 -11.47 -0.09 11.04 15 4 O -0.60 -15.10 16.39 5.56 0.09 -15.01 15 5 C -0.12 -2.32 6.01 -28.12 -0.17 -2.49 15 6 C -0.15 -2.80 6.18 -26.50 -0.16 -2.96 15 7 C 0.19 4.27 5.04 -3.52 -0.02 4.25 15 8 N -0.41 -10.30 3.73 -59.31 -0.22 -10.52 15 9 C -0.25 -6.41 8.69 -15.06 -0.13 -6.54 15 10 H 0.08 1.98 7.38 -52.48 -0.39 1.60 15 11 C 0.01 0.25 5.04 -17.43 -0.09 0.16 15 12 N -0.90 -23.78 10.99 55.49 0.61 -23.17 15 13 Si 0.93 20.06 29.58 -169.99 -5.03 15.04 15 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 15 H -0.29 -6.23 7.11 56.52 0.40 -5.83 15 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 17 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 18 H 0.07 1.41 7.23 -51.93 -0.38 1.03 15 19 H 0.07 1.56 7.47 -51.92 -0.39 1.17 15 20 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 21 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 22 H 0.06 1.23 8.14 -51.93 -0.42 0.80 15 23 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.10 2.48 6.39 -51.93 -0.33 2.15 15 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.26 6.68 8.32 -40.82 -0.34 6.34 15 LS Contribution 219.57 15.07 3.31 3.31 Total: -1.00 -29.55 219.57 -4.74 -34.29 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.15 Total: -0.35 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.08 Total: 5.95 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.13 Total: -43.22 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.01 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -29.55 -4.74 -34.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260937406.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.681 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds