Wall clock time and date at job start Thu Apr 9 2020 13:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 9 9 O 1.42895 * 109.47606 * 180.02562 * 8 2 1 10 10 C 1.50696 * 109.47490 * 300.00187 * 8 2 1 11 11 H 1.08003 * 119.99760 * 359.97438 * 10 8 2 12 12 C 1.37872 * 120.00824 * 179.97438 * 10 8 2 13 13 N 1.31515 * 119.99390 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00449 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47347 * 59.99963 * 14 12 10 16 16 H 1.48500 * 109.47035 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46845 * 299.99501 * 14 12 10 18 18 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 23 23 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 24 24 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 25 25 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 26 26 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.47261 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 29 29 H 0.96705 * 114.00563 * 180.02562 * 9 8 2 30 30 H 0.97010 * 119.99733 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0400 -0.7212 1.2491 9 8 3.4690 -0.7207 1.2495 10 6 1.5378 -0.0110 2.4797 11 1 0.9171 0.8673 2.3806 12 6 1.8704 -0.4823 3.7319 13 7 2.6258 -1.5521 3.8525 14 14 1.2472 0.3978 5.2572 15 1 -0.2378 0.3977 5.2567 16 1 1.7424 -0.3022 6.4696 17 1 1.7422 1.7979 5.2577 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.6767 -0.2073 -2.1392 22 1 3.1300 -0.7208 -1.2496 23 1 1.8937 -2.6776 -2.1391 24 1 0.4400 -2.1637 -1.2493 25 1 3.1301 -2.8849 -0.0002 26 1 1.6771 -3.9128 -0.0004 27 1 1.8930 -2.6779 2.1390 28 1 0.4401 -2.1638 1.2491 29 1 3.8624 -1.1628 2.0143 30 1 2.8602 -1.8836 4.7335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039147509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:52 Heat of formation + Delta-G solvation = -77.194105 kcal Electronic energy + Delta-G solvation = -12262.400286 eV Core-core repulsion = 10249.522459 eV Total energy + Delta-G solvation = -2012.877826 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.46178 -34.03699 -32.00978 -31.07336 -28.85968 -25.76617 -24.43992 -21.19673 -20.79762 -17.43023 -16.74813 -15.01453 -14.74515 -14.20267 -13.69818 -13.33823 -12.40332 -12.05165 -11.88106 -11.43270 -11.22804 -10.94184 -10.92149 -10.67087 -10.50901 -10.15961 -10.04132 -9.83248 -9.51562 -9.22318 -8.66511 -8.42513 -7.82468 -6.06942 -4.17300 3.28302 3.33047 3.36187 4.37697 5.15491 5.65263 5.68398 5.77408 6.08770 6.20769 6.29110 6.43606 6.49153 6.54638 6.64705 6.76891 6.83023 6.92366 6.97853 7.04341 7.21295 7.27539 7.48236 7.69507 7.84220 8.13068 8.32878 8.84623 9.50482 9.68954 10.95098 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.055990 B = 0.015761 C = 0.014316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.965344 B = 1776.102932 C = 1955.399011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.138 4.138 8 C 0.259 3.741 9 O -0.592 6.592 10 C -0.530 4.530 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.900 5.900 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.060 0.940 19 H 0.054 0.946 20 H 0.033 0.967 21 H 0.040 0.960 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.377 0.623 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -0.778 -5.143 5.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.176 4.176 8 C 0.219 3.781 9 O -0.401 6.401 10 C -0.568 4.568 11 H 0.077 0.923 12 C -0.133 4.133 13 N -0.541 5.541 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 H 0.079 0.921 19 H 0.073 0.927 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.227 0.773 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.257 -0.566 -5.565 6.033 hybrid contribution -0.302 0.110 1.465 1.500 sum -2.560 -0.457 -4.101 4.855 Atomic orbital electron populations 1.21821 0.96011 1.01334 1.00161 1.20934 0.94603 0.98789 0.94699 0.92550 1.21489 1.00875 0.95198 0.97031 1.21527 0.99990 0.96249 0.97440 1.21525 1.00723 0.97155 0.95921 1.22198 0.99055 0.99307 0.97021 1.18507 0.78735 0.90253 0.90562 1.86078 1.21977 1.82070 1.49994 1.21810 1.31404 1.12358 0.91229 0.92323 1.24997 0.94650 0.94591 0.99095 1.69601 1.37606 1.22897 1.24021 0.86606 0.79146 0.79866 0.82058 1.20279 1.21271 1.20242 0.92105 0.92747 0.94823 0.94130 0.91929 0.93961 0.92734 0.92446 0.94462 0.89190 0.93874 0.77286 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.25 37.16 0.31 -2.37 16 2 C -0.07 -1.57 2.42 -90.62 -0.22 -1.79 16 3 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 4 C -0.11 -2.11 5.31 -26.73 -0.14 -2.25 16 5 C -0.11 -2.10 5.65 -26.73 -0.15 -2.25 16 6 C -0.12 -2.36 5.78 -26.73 -0.15 -2.51 16 7 C -0.14 -3.26 4.42 -26.73 -0.12 -3.38 16 8 C 0.26 6.45 0.44 -91.78 -0.04 6.41 16 9 O -0.59 -15.62 11.61 -35.23 -0.41 -16.03 16 10 C -0.53 -14.33 7.51 -34.44 -0.26 -14.59 16 11 H 0.06 1.58 6.71 -52.48 -0.35 1.23 16 12 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 13 N -0.90 -24.35 9.68 55.43 0.54 -23.81 16 14 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 19 H 0.05 1.05 4.81 -51.93 -0.25 0.80 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.96 6.43 -51.93 -0.33 0.62 16 25 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.04 1.01 6.43 -51.93 -0.33 0.67 16 29 H 0.38 10.19 7.15 45.56 0.33 10.51 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 225.75 15.07 3.40 3.40 Total: -1.00 -27.04 225.75 -6.01 -33.05 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.65 Total: 8.41 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.87 Total: -21.01 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.54 Total: -23.81 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.41 Total: -16.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.04 -6.01 -33.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039147509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.143 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds