Wall clock time and date at job start Thu Apr 9 2020 13:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 9 9 O 1.42895 * 109.47606 * 180.02562 * 8 2 1 10 10 C 1.50696 * 109.47490 * 300.00187 * 8 2 1 11 11 H 1.08003 * 119.99760 * 359.97438 * 10 8 2 12 12 C 1.37872 * 120.00824 * 179.97438 * 10 8 2 13 13 N 1.31515 * 119.99390 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00449 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47347 * 59.99963 * 14 12 10 16 16 H 1.48500 * 109.47035 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46845 * 299.99501 * 14 12 10 18 18 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 23 23 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 24 24 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 25 25 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 26 26 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.47261 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 29 29 H 0.96705 * 114.00563 * 180.02562 * 9 8 2 30 30 H 0.97010 * 119.99733 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0400 -0.7212 1.2491 9 8 3.4690 -0.7207 1.2495 10 6 1.5378 -0.0110 2.4797 11 1 0.9171 0.8673 2.3806 12 6 1.8704 -0.4823 3.7319 13 7 2.6258 -1.5521 3.8525 14 14 1.2472 0.3978 5.2572 15 1 -0.2378 0.3977 5.2567 16 1 1.7424 -0.3022 6.4696 17 1 1.7422 1.7979 5.2577 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.6767 -0.2073 -2.1392 22 1 3.1300 -0.7208 -1.2496 23 1 1.8937 -2.6776 -2.1391 24 1 0.4400 -2.1637 -1.2493 25 1 3.1301 -2.8849 -0.0002 26 1 1.6771 -3.9128 -0.0004 27 1 1.8930 -2.6779 2.1390 28 1 0.4401 -2.1638 1.2491 29 1 3.8624 -1.1628 2.0143 30 1 2.8602 -1.8836 4.7335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039147509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:52 Heat of formation + Delta-G solvation = -94.157951 kcal Electronic energy + Delta-G solvation = -12263.135893 eV Core-core repulsion = 10249.522459 eV Total energy + Delta-G solvation = -2013.613434 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.23378 -35.91671 -34.08042 -32.73357 -30.65801 -27.58422 -26.23710 -22.95761 -22.49302 -19.17491 -18.76668 -17.00830 -16.56391 -15.92876 -15.46328 -15.14049 -14.05043 -13.81794 -13.66162 -13.12157 -13.10017 -12.79880 -12.65340 -12.30936 -12.28286 -12.01740 -11.88837 -11.54040 -11.26851 -10.92197 -10.55119 -10.35926 -9.80155 -8.09918 -6.28013 1.40582 1.41705 1.48896 2.41190 3.09305 3.99703 4.10703 4.21024 4.41963 4.58242 4.70748 4.75692 4.94730 4.96690 5.00119 5.15608 5.16856 5.26904 5.36939 5.39339 5.48440 5.62102 5.66698 5.73686 5.97239 6.19118 6.32865 6.78103 7.42393 7.58804 8.89142 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.055990 B = 0.015761 C = 0.014316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.965344 B = 1776.102932 C = 1955.399011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 H 0.038 0.962 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.131 4.131 8 C 0.245 3.755 9 O -0.600 6.600 10 C -0.554 4.554 11 H 0.051 0.949 12 C 0.025 3.975 13 N -0.915 5.915 14 Si 0.952 3.048 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.278 1.278 18 H 0.042 0.958 19 H 0.058 0.942 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.369 0.631 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -0.883 -6.185 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.095 4.095 3 H 0.057 0.943 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.169 4.169 8 C 0.206 3.794 9 O -0.408 6.408 10 C -0.592 4.592 11 H 0.069 0.931 12 C -0.174 4.174 13 N -0.556 5.556 14 Si 0.778 3.222 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.203 1.203 18 H 0.061 0.939 19 H 0.077 0.923 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.218 0.782 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.211 -0.671 -6.619 7.387 hybrid contribution 0.015 0.154 1.799 1.805 sum -3.196 -0.517 -4.820 5.806 Atomic orbital electron populations 1.21744 0.94135 1.01791 1.00894 1.20969 0.96182 0.97685 0.94647 0.94320 1.21458 0.99840 0.96157 0.96776 1.21512 1.00754 0.95205 0.97216 1.21476 0.99801 0.98209 0.95540 1.22022 0.98734 0.98596 0.97556 1.18785 0.77796 0.91313 0.91507 1.86082 1.23227 1.82043 1.49488 1.22111 1.31820 1.12556 0.92687 0.93079 1.25663 0.94905 0.95268 1.01539 1.69712 1.37896 1.23507 1.24448 0.85715 0.78780 0.78647 0.79048 1.19735 1.20776 1.20340 0.93855 0.92338 0.91625 0.91093 0.93656 0.91020 0.91400 0.93908 0.92520 0.92212 0.94000 0.78197 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.25 71.98 0.59 -4.20 16 2 C -0.08 -3.26 2.42 -10.79 -0.03 -3.28 16 3 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.10 -3.81 5.31 30.60 0.16 -3.65 16 5 C -0.11 -3.64 5.65 30.60 0.17 -3.46 16 6 C -0.11 -4.41 5.78 30.59 0.18 -4.23 16 7 C -0.13 -6.15 4.42 30.59 0.14 -6.02 16 8 C 0.24 12.25 0.44 -11.54 -0.01 12.25 16 9 O -0.60 -32.21 11.61 -148.98 -1.73 -33.94 16 10 C -0.55 -30.25 7.51 25.60 0.19 -30.06 16 11 H 0.05 2.79 6.71 -2.91 -0.02 2.77 16 12 C 0.03 1.36 5.22 84.65 0.44 1.80 16 13 N -0.91 -50.11 9.68 21.45 0.21 -49.90 16 14 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 19 H 0.06 2.11 4.81 -2.39 -0.01 2.10 16 20 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.04 1.79 7.68 -2.39 -0.02 1.77 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.07 2.10 6.43 -2.39 -0.02 2.08 16 25 H 0.04 1.78 7.68 -2.39 -0.02 1.76 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 28 H 0.04 1.93 6.43 -2.39 -0.02 1.91 16 29 H 0.37 20.55 7.15 -74.05 -0.53 20.02 16 30 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -57.17 225.75 2.94 -54.23 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.60 Total: 25.24 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 1.84 Total: -40.85 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.21 Total: -49.90 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.73 Total: -33.94 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -57.17 2.94 -54.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039147509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.930 kcal (2) G-P(sol) polarization free energy of solvation -57.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds