Wall clock time and date at job start Thu Apr 9 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48501 * 109.46784 * 269.99757 * 3 2 1 5 5 H 1.48497 * 109.47267 * 29.99431 * 3 2 1 6 6 H 1.48493 * 109.46934 * 150.00178 * 3 2 1 7 7 C 1.37875 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.46847 * 110.99897 * 66.04550 * 10 9 7 12 12 C 1.53034 * 109.51345 * 174.16738 * 11 10 9 13 13 C 1.53099 * 109.29509 * 59.18740 * 12 11 10 14 14 C 1.53126 * 109.15071 * 302.33888 * 13 12 11 15 15 H 1.08996 * 109.53423 * 297.69425 * 14 13 12 16 16 N 1.46898 * 109.49996 * 177.59181 * 14 13 12 17 17 C 1.46854 * 110.99958 * 301.83688 * 10 9 7 18 18 H 0.96993 * 120.00246 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46720 * 59.99865 * 9 7 2 20 20 H 1.08995 * 109.47124 * 300.00339 * 9 7 2 21 21 H 1.09002 * 109.46481 * 294.17890 * 11 10 9 22 22 H 1.08994 * 109.46283 * 54.15743 * 11 10 9 23 23 H 1.09007 * 109.50453 * 179.12106 * 12 11 10 24 24 H 1.09009 * 109.50412 * 299.23146 * 12 11 10 25 25 H 1.08990 * 109.52931 * 182.43636 * 13 12 11 26 26 H 1.09002 * 109.57693 * 62.27167 * 13 12 11 27 27 H 1.00902 * 110.99764 * 60.20068 * 16 14 13 28 28 H 1.00901 * 110.99773 * 184.15353 * 16 14 13 29 29 H 1.08993 * 109.46229 * 305.85774 * 17 10 9 30 30 H 1.09008 * 109.45822 * 65.82829 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 2.9717 -3.6534 1.2537 12 6 3.8481 -4.9077 1.2793 13 6 4.7981 -4.8856 0.0789 14 6 3.9766 -4.7974 -1.2103 15 1 3.3467 -5.6822 -1.3023 16 7 4.8821 -4.7176 -2.3642 17 6 3.0964 -3.5463 -1.1640 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8919 21 1 3.6034 -2.7676 1.3199 22 1 2.2843 -3.6733 2.0994 23 1 4.4282 -4.9276 2.2020 24 1 3.2161 -5.7944 1.2271 25 1 5.3942 -5.7980 0.0693 26 1 5.4573 -4.0205 0.1508 27 1 5.4740 -5.5332 -2.4164 28 1 4.3651 -4.5906 -3.2214 29 1 2.4997 -3.4881 -2.0742 30 1 3.7276 -2.6609 -1.0864 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041030024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:58 Heat of formation + Delta-G solvation = -10.268956 kcal Electronic energy + Delta-G solvation = -11664.065192 eV Core-core repulsion = 9686.382209 eV Total energy + Delta-G solvation = -1977.682983 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.39057 -34.41987 -32.60752 -31.43186 -27.76231 -26.66221 -23.88571 -21.86751 -20.85867 -19.00985 -16.36588 -15.27440 -15.19607 -14.66870 -14.29996 -14.07245 -13.19605 -12.66260 -12.53137 -11.94263 -11.66109 -11.14327 -11.03808 -10.82700 -10.42063 -10.33638 -10.09457 -9.97551 -9.73795 -9.40038 -8.41886 -8.40592 -7.13354 -6.00135 -4.09265 3.29661 3.36141 3.39898 4.43151 4.63933 5.18776 5.27743 5.32379 5.45490 5.62922 5.81712 6.02730 6.08955 6.27197 6.38154 6.50886 6.54231 6.69038 6.82299 6.93321 7.27747 7.45231 7.54781 7.66828 7.92484 8.10256 8.32192 8.35814 9.01337 9.57617 11.04770 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.049420 B = 0.011617 C = 0.011016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.432973 B = 2409.621085 C = 2541.100674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.188 3.812 10 N -0.543 5.543 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.109 4.109 14 C 0.090 3.910 15 H 0.035 0.965 16 N -0.848 5.848 17 C 0.073 3.927 18 H 0.262 0.738 19 H 0.030 0.970 20 H 0.031 0.969 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.334 0.666 28 H 0.340 0.660 29 H 0.060 0.940 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 -8.355 -0.820 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.076 0.924 9 C 0.062 3.938 10 N -0.267 5.267 11 C -0.067 4.067 12 C -0.155 4.155 13 C -0.147 4.147 14 C -0.021 4.021 15 H 0.053 0.947 16 N -0.378 5.378 17 C -0.056 4.056 18 H 0.072 0.928 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.078 0.922 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.001 -8.018 -0.486 10.656 hybrid contribution 0.379 0.952 -0.320 1.074 sum 7.380 -7.066 -0.806 10.249 Atomic orbital electron populations 1.69946 1.06009 1.26791 1.50337 1.24966 0.94768 0.99150 0.94943 0.86638 0.79912 0.83583 0.78175 1.20604 1.21162 1.19946 1.21780 0.93407 0.92098 1.51461 0.92427 1.19736 0.90718 0.85453 0.97872 1.62388 1.17059 1.46500 1.00776 1.21870 0.95799 0.95551 0.93469 1.21608 0.97500 0.99411 0.96932 1.21541 0.97676 1.01131 0.94324 1.21431 0.92501 0.98101 0.90083 0.94688 1.58663 1.26445 1.46565 1.06110 1.21765 0.94167 0.95191 0.94467 0.92848 0.95176 0.95094 0.94463 0.91768 0.92306 0.91987 0.93177 0.91676 0.85428 0.84805 0.92196 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.55 -15.42 7.74 -34.44 -0.27 -15.68 16 8 H 0.06 1.62 5.84 -52.48 -0.31 1.32 16 9 C 0.19 4.96 5.13 -4.98 -0.03 4.94 16 10 N -0.54 -12.05 4.86 -236.11 -1.15 -13.19 16 11 C 0.06 1.24 5.14 -3.84 -0.02 1.22 16 12 C -0.12 -1.85 6.09 -26.66 -0.16 -2.02 16 13 C -0.11 -1.68 5.58 -26.62 -0.15 -1.83 16 14 C 0.09 1.48 3.41 -67.63 -0.23 1.25 16 15 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 16 N -0.85 -11.90 9.25 -4.60 -0.04 -11.94 16 17 C 0.07 1.50 4.55 -3.83 -0.02 1.48 16 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 19 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 21 H 0.04 0.82 7.03 -51.93 -0.36 0.45 16 22 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.33 3.84 9.04 -39.29 -0.36 3.48 16 28 H 0.34 4.39 8.99 -39.29 -0.35 4.04 16 29 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 30 H 0.05 1.08 6.57 -51.92 -0.34 0.74 16 LS Contribution 240.23 15.07 3.62 3.62 Total: -1.00 -29.56 240.23 -7.47 -37.03 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.65 Total: 2.43 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.97 Total: -8.91 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.45 Total: -50.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.56 -7.47 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041030024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.762 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds