Wall clock time and date at job start Thu Apr 9 2020 13:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48501 * 109.46784 * 269.99757 * 3 2 1 5 5 H 1.48497 * 109.47267 * 29.99431 * 3 2 1 6 6 H 1.48493 * 109.46934 * 150.00178 * 3 2 1 7 7 C 1.37875 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.46847 * 110.99897 * 66.04550 * 10 9 7 12 12 C 1.53034 * 109.51345 * 174.16738 * 11 10 9 13 13 C 1.53099 * 109.29509 * 59.18740 * 12 11 10 14 14 C 1.53126 * 109.15071 * 302.33888 * 13 12 11 15 15 H 1.08996 * 109.53423 * 297.69425 * 14 13 12 16 16 N 1.46898 * 109.49996 * 177.59181 * 14 13 12 17 17 C 1.46854 * 110.99958 * 301.83688 * 10 9 7 18 18 H 0.96993 * 120.00246 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46720 * 59.99865 * 9 7 2 20 20 H 1.08995 * 109.47124 * 300.00339 * 9 7 2 21 21 H 1.09002 * 109.46481 * 294.17890 * 11 10 9 22 22 H 1.08994 * 109.46283 * 54.15743 * 11 10 9 23 23 H 1.09007 * 109.50453 * 179.12106 * 12 11 10 24 24 H 1.09009 * 109.50412 * 299.23146 * 12 11 10 25 25 H 1.08990 * 109.52931 * 182.43636 * 13 12 11 26 26 H 1.09002 * 109.57693 * 62.27167 * 13 12 11 27 27 H 1.00902 * 110.99764 * 60.20068 * 16 14 13 28 28 H 1.00901 * 110.99773 * 184.15353 * 16 14 13 29 29 H 1.08993 * 109.46229 * 305.85774 * 17 10 9 30 30 H 1.09008 * 109.45822 * 65.82829 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 2.9717 -3.6534 1.2537 12 6 3.8481 -4.9077 1.2793 13 6 4.7981 -4.8856 0.0789 14 6 3.9766 -4.7974 -1.2103 15 1 3.3467 -5.6822 -1.3023 16 7 4.8821 -4.7176 -2.3642 17 6 3.0964 -3.5463 -1.1640 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8919 21 1 3.6034 -2.7676 1.3199 22 1 2.2843 -3.6733 2.0994 23 1 4.4282 -4.9276 2.2020 24 1 3.2161 -5.7944 1.2271 25 1 5.3942 -5.7980 0.0693 26 1 5.4573 -4.0205 0.1508 27 1 5.4740 -5.5332 -2.4164 28 1 4.3651 -4.5906 -3.2214 29 1 2.4997 -3.4881 -2.0742 30 1 3.7276 -2.6609 -1.0864 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041030024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:57 Heat of formation + Delta-G solvation = -33.139683 kcal Electronic energy + Delta-G solvation = -11665.056941 eV Core-core repulsion = 9686.382209 eV Total energy + Delta-G solvation = -1978.674732 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.96854 -36.08522 -34.46123 -33.05450 -29.30269 -28.57966 -25.78092 -23.39506 -22.58491 -20.57040 -18.48279 -17.00279 -16.58241 -16.08962 -16.01301 -15.60222 -15.03329 -14.42316 -14.14463 -13.55564 -13.31225 -12.98956 -12.88453 -12.52661 -12.28409 -12.11996 -11.85899 -11.64183 -11.48992 -11.03252 -10.63482 -9.57419 -9.05526 -8.17918 -6.38170 1.34894 1.35227 1.46340 2.35320 3.06213 3.20778 3.76488 3.94987 4.08991 4.23637 4.40379 4.57723 4.68263 4.91160 4.93296 5.05187 5.10014 5.17094 5.20601 5.27674 5.30543 5.48001 5.71508 6.02582 6.22349 6.24346 6.56054 6.69407 6.82823 7.33421 8.84383 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.049420 B = 0.011617 C = 0.011016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.432973 B = 2409.621085 C = 2541.100674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.053 0.947 9 C 0.200 3.800 10 N -0.541 5.541 11 C 0.059 3.941 12 C -0.106 4.106 13 C -0.106 4.106 14 C 0.101 3.899 15 H 0.043 0.957 16 N -0.850 5.850 17 C 0.076 3.924 18 H 0.266 0.734 19 H 0.003 0.997 20 H 0.007 0.993 21 H 0.013 0.987 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.353 0.647 28 H 0.346 0.654 29 H 0.047 0.953 30 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -9.101 -0.769 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.071 0.929 9 C 0.073 3.927 10 N -0.265 5.265 11 C -0.069 4.069 12 C -0.144 4.144 13 C -0.144 4.144 14 C -0.011 4.011 15 H 0.061 0.939 16 N -0.383 5.383 17 C -0.053 4.053 18 H 0.075 0.925 19 H 0.021 0.979 20 H 0.025 0.975 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.168 0.832 28 H 0.159 0.841 29 H 0.066 0.934 30 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.774 -8.790 -0.441 12.428 hybrid contribution -0.187 1.153 -0.350 1.220 sum 8.588 -7.637 -0.791 11.519 Atomic orbital electron populations 1.70060 1.07520 1.27956 1.50977 1.25829 0.95664 1.02881 0.94419 0.85552 0.78629 0.79026 0.78488 1.19837 1.20274 1.19407 1.21966 0.93247 0.93080 1.51433 0.92893 1.19409 0.91183 0.86801 0.95327 1.62341 1.17558 1.44078 1.02535 1.21969 0.95706 0.97163 0.92070 1.21563 0.97185 0.97031 0.98654 1.21541 0.97387 1.02278 0.93179 1.21236 0.92481 0.95586 0.91793 0.93937 1.58570 1.26185 1.47842 1.05663 1.21762 0.93765 0.96587 0.93142 0.92505 0.97859 0.97476 0.96822 0.92377 0.89617 0.90867 0.89641 0.93005 0.83237 0.84108 0.93442 0.96402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.56 -32.20 7.74 25.60 0.20 -32.00 16 8 H 0.05 3.05 5.84 -2.91 -0.02 3.04 16 9 C 0.20 10.97 5.13 85.56 0.44 11.41 16 10 N -0.54 -24.38 4.86 -900.92 -4.38 -28.76 16 11 C 0.06 2.37 5.14 86.32 0.44 2.82 16 12 C -0.11 -3.10 6.09 30.64 0.19 -2.92 16 13 C -0.11 -2.96 5.58 30.67 0.17 -2.78 16 14 C 0.10 3.09 3.41 44.97 0.15 3.25 16 15 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 16 N -0.85 -21.80 9.25 -168.46 -1.56 -23.36 16 17 C 0.08 3.15 4.55 86.32 0.39 3.54 16 18 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 19 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 20 H 0.01 0.42 8.06 -2.39 -0.02 0.40 16 21 H 0.01 0.60 7.03 -2.39 -0.02 0.58 16 22 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 23 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.35 6.89 9.04 -89.69 -0.81 6.08 16 28 H 0.35 8.28 8.99 -89.69 -0.81 7.47 16 29 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 30 H 0.02 0.83 6.57 -2.38 -0.02 0.82 16 Total: -1.00 -64.12 240.23 -1.67 -65.79 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.49 Total: 10.68 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 2.45 Total: -15.56 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -5.65 Total: -108.01 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.12 -1.67 -65.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041030024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.649 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds