Wall clock time and date at job start Thu Apr 9 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48497 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47290 * 299.99878 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99840 * 3 2 1 7 7 C 1.37881 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99989 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.46874 * 179.97438 * 9 7 2 11 11 C 1.46851 * 111.00209 * 65.79394 * 10 9 7 12 12 C 1.53035 * 109.52233 * 185.83859 * 11 10 9 13 13 C 1.53128 * 109.30804 * 300.83320 * 12 11 10 14 14 C 1.53119 * 109.15542 * 57.60229 * 13 12 11 15 15 H 1.09000 * 109.50640 * 62.36099 * 14 13 12 16 16 N 1.46905 * 109.50122 * 182.44081 * 14 13 12 17 17 C 1.46849 * 110.99980 * 189.99862 * 10 9 7 18 18 H 0.97005 * 120.00184 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47012 * 59.99424 * 9 7 2 20 20 H 1.09003 * 109.46674 * 299.99868 * 9 7 2 21 21 H 1.09002 * 109.45622 * 305.84877 * 11 10 9 22 22 H 1.08996 * 109.46484 * 65.81941 * 11 10 9 23 23 H 1.08998 * 109.51050 * 60.76054 * 12 11 10 24 24 H 1.09005 * 109.50080 * 180.84016 * 12 11 10 25 25 H 1.08994 * 109.49065 * 297.71452 * 13 12 11 26 26 H 1.09007 * 109.55037 * 177.52149 * 13 12 11 27 27 H 1.00901 * 110.99869 * 299.92218 * 16 14 13 28 28 H 1.00896 * 110.99543 * 63.87341 * 16 14 13 29 29 H 1.09000 * 109.46439 * 54.14224 * 17 10 9 30 30 H 1.09002 * 109.46306 * 294.17917 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9749 -3.6504 1.2509 12 6 4.0547 -4.7307 1.1572 13 6 3.3924 -6.0882 0.9058 14 6 2.5578 -6.0105 -0.3756 15 1 3.2104 -5.7989 -1.2227 16 7 1.8721 -7.2914 -0.5927 17 6 1.5214 -4.8930 -0.2375 18 1 -0.4851 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.4446 -2.6806 1.4153 22 1 2.3069 -3.8758 2.0822 23 1 4.7314 -4.4986 0.3348 24 1 4.6159 -4.7663 2.0910 25 1 2.7460 -6.3388 1.7469 26 1 4.1604 -6.8538 0.7945 27 1 2.5359 -8.0456 -0.6857 28 1 1.2132 -7.4788 0.1480 29 1 0.9354 -4.8259 -1.1541 30 1 0.8602 -5.1126 0.6008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041030025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:58 Heat of formation + Delta-G solvation = -10.346512 kcal Electronic energy + Delta-G solvation = -11519.357668 eV Core-core repulsion = 9541.671322 eV Total energy + Delta-G solvation = -1977.686346 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.50674 -34.51592 -32.56830 -31.49941 -28.01754 -26.70570 -23.73342 -22.01595 -20.86949 -19.31993 -16.34360 -15.67347 -15.35142 -14.32972 -14.12701 -13.89483 -13.26794 -13.13201 -12.62044 -12.21239 -11.89033 -11.19110 -10.82371 -10.78087 -10.61783 -10.52917 -10.37119 -10.07971 -9.67069 -9.13182 -8.50405 -8.41757 -7.19992 -6.00888 -4.02145 3.32108 3.39345 3.44289 4.41639 4.62581 5.01366 5.15625 5.30238 5.34479 5.48826 5.67381 5.89607 5.92290 6.14289 6.19772 6.24363 6.44673 6.50593 6.72648 6.76058 7.26480 7.35610 7.39330 7.55607 7.83232 8.13010 8.24631 8.58632 9.05879 9.61961 11.10094 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.070444 B = 0.009925 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.382595 B = 2820.352481 C = 3082.779868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.063 3.937 12 C -0.114 4.114 13 C -0.150 4.150 14 C 0.092 3.908 15 H 0.086 0.914 16 N -0.845 5.845 17 C 0.065 3.935 18 H 0.260 0.740 19 H 0.031 0.969 20 H -0.010 1.010 21 H 0.084 0.916 22 H 0.017 0.983 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.337 0.663 28 H 0.335 0.665 29 H 0.074 0.926 30 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -10.306 2.178 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.153 4.153 13 C -0.190 4.190 14 C -0.019 4.019 15 H 0.105 0.895 16 N -0.373 5.373 17 C -0.064 4.064 18 H 0.070 0.930 19 H 0.049 0.951 20 H 0.008 0.992 21 H 0.102 0.898 22 H 0.035 0.965 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.092 0.908 30 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.286 -9.768 1.105 11.162 hybrid contribution 0.205 0.505 1.642 1.730 sum 5.492 -9.263 2.746 11.113 Atomic orbital electron populations 1.69972 1.06068 1.26635 1.51157 1.25004 0.94874 0.99339 0.95507 0.86442 0.80067 0.83432 0.77487 1.19661 1.20991 1.21152 1.21210 0.93532 0.89917 1.49819 0.91783 1.19710 0.90043 0.87277 0.96107 1.61962 1.27945 1.02516 1.33656 1.21955 0.94913 0.99028 0.90646 1.21569 0.98364 0.94230 1.01107 1.22412 0.99467 0.98091 0.98998 1.21515 0.94906 0.89103 0.96402 0.89543 1.58879 1.21557 1.04427 1.52429 1.21939 0.94369 0.89796 1.00289 0.92995 0.95096 0.99242 0.89769 0.96522 0.91349 0.92508 0.92861 0.92798 0.85150 0.85257 0.90768 0.96483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.43 8.43 -34.44 -0.29 -14.72 16 8 H 0.06 1.80 7.12 -52.48 -0.37 1.43 16 9 C 0.19 5.19 4.72 -4.98 -0.02 5.17 16 10 N -0.54 -11.92 4.65 -236.11 -1.10 -13.02 16 11 C 0.06 1.25 5.30 -3.83 -0.02 1.23 16 12 C -0.11 -1.79 6.09 -26.65 -0.16 -1.95 16 13 C -0.15 -2.09 5.58 -26.60 -0.15 -2.24 16 14 C 0.09 1.42 3.41 -67.63 -0.23 1.19 16 15 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 16 N -0.85 -10.88 9.26 -4.60 -0.04 -10.92 16 17 C 0.07 1.25 5.00 -3.83 -0.02 1.23 16 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 19 H 0.03 0.89 7.99 -51.93 -0.41 0.47 16 20 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 21 H 0.08 1.81 6.70 -51.93 -0.35 1.46 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.34 3.55 9.04 -39.29 -0.36 3.19 16 28 H 0.34 3.99 8.98 -39.29 -0.35 3.63 16 29 H 0.07 1.49 8.01 -51.93 -0.42 1.07 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 243.30 15.07 3.67 3.67 Total: -1.00 -29.92 243.30 -7.53 -37.45 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.78 Total: 1.00 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.99 Total: -8.65 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.40 Total: -50.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.92 -7.53 -37.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041030025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.102 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds