Wall clock time and date at job start Thu Apr 9 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48497 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47290 * 299.99878 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99840 * 3 2 1 7 7 C 1.37881 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99989 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.46874 * 179.97438 * 9 7 2 11 11 C 1.46851 * 111.00209 * 65.79394 * 10 9 7 12 12 C 1.53035 * 109.52233 * 185.83859 * 11 10 9 13 13 C 1.53128 * 109.30804 * 300.83320 * 12 11 10 14 14 C 1.53119 * 109.15542 * 57.60229 * 13 12 11 15 15 H 1.09000 * 109.50640 * 62.36099 * 14 13 12 16 16 N 1.46905 * 109.50122 * 182.44081 * 14 13 12 17 17 C 1.46849 * 110.99980 * 189.99862 * 10 9 7 18 18 H 0.97005 * 120.00184 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47012 * 59.99424 * 9 7 2 20 20 H 1.09003 * 109.46674 * 299.99868 * 9 7 2 21 21 H 1.09002 * 109.45622 * 305.84877 * 11 10 9 22 22 H 1.08996 * 109.46484 * 65.81941 * 11 10 9 23 23 H 1.08998 * 109.51050 * 60.76054 * 12 11 10 24 24 H 1.09005 * 109.50080 * 180.84016 * 12 11 10 25 25 H 1.08994 * 109.49065 * 297.71452 * 13 12 11 26 26 H 1.09007 * 109.55037 * 177.52149 * 13 12 11 27 27 H 1.00901 * 110.99869 * 299.92218 * 16 14 13 28 28 H 1.00896 * 110.99543 * 63.87341 * 16 14 13 29 29 H 1.09000 * 109.46439 * 54.14224 * 17 10 9 30 30 H 1.09002 * 109.46306 * 294.17917 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9749 -3.6504 1.2509 12 6 4.0547 -4.7307 1.1572 13 6 3.3924 -6.0882 0.9058 14 6 2.5578 -6.0105 -0.3756 15 1 3.2104 -5.7989 -1.2227 16 7 1.8721 -7.2914 -0.5927 17 6 1.5214 -4.8930 -0.2375 18 1 -0.4851 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.4446 -2.6806 1.4153 22 1 2.3069 -3.8758 2.0822 23 1 4.7314 -4.4986 0.3348 24 1 4.6159 -4.7663 2.0910 25 1 2.7460 -6.3388 1.7469 26 1 4.1604 -6.8538 0.7945 27 1 2.5359 -8.0456 -0.6857 28 1 1.2132 -7.4788 0.1480 29 1 0.9354 -4.8259 -1.1541 30 1 0.8602 -5.1126 0.6008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041030025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:58 Heat of formation + Delta-G solvation = -33.435861 kcal Electronic energy + Delta-G solvation = -11520.358897 eV Core-core repulsion = 9541.671322 eV Total energy + Delta-G solvation = -1978.687575 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.00448 -36.14222 -34.48277 -33.01635 -29.67507 -28.43324 -25.57495 -23.49701 -22.60385 -20.72428 -18.50220 -17.12090 -16.86220 -16.18245 -15.62595 -15.42306 -14.73460 -14.61559 -14.20339 -13.97325 -13.56830 -13.02417 -12.68189 -12.54030 -12.24752 -12.13466 -11.86456 -11.72930 -11.42139 -11.06923 -10.64309 -9.56914 -9.04656 -8.22323 -6.33116 1.40292 1.41300 1.55172 2.39188 3.09096 3.16464 3.74704 3.88718 3.99840 4.15542 4.32943 4.41734 4.67133 4.71382 4.80363 4.90413 5.00301 5.13544 5.15357 5.20187 5.29380 5.44202 5.63985 6.02794 6.22863 6.32486 6.61004 6.68482 6.83434 7.36811 8.89374 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.070444 B = 0.009925 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.382595 B = 2820.352481 C = 3082.779868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.061 3.939 12 C -0.106 4.106 13 C -0.142 4.142 14 C 0.104 3.896 15 H 0.079 0.921 16 N -0.846 5.846 17 C 0.064 3.936 18 H 0.265 0.735 19 H 0.001 0.999 20 H -0.041 1.041 21 H 0.062 0.938 22 H 0.010 0.990 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.355 0.645 28 H 0.343 0.657 29 H 0.055 0.945 30 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.195 -11.089 2.545 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.267 5.267 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.182 4.182 14 C -0.008 4.008 15 H 0.097 0.903 16 N -0.376 5.376 17 C -0.065 4.065 18 H 0.074 0.926 19 H 0.019 0.981 20 H -0.023 1.023 21 H 0.081 0.919 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.169 0.831 28 H 0.156 0.844 29 H 0.074 0.926 30 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 7.093 -10.592 1.475 12.833 hybrid contribution -0.407 0.697 1.524 1.725 sum 6.686 -9.895 2.999 12.313 Atomic orbital electron populations 1.70104 1.07847 1.27926 1.51752 1.25986 0.95804 1.03429 0.94711 0.85269 0.78953 0.78220 0.77779 1.18560 1.20318 1.20290 1.21488 0.93667 0.90916 1.50085 0.91707 1.19366 0.90146 0.89193 0.93162 1.61897 1.26977 1.02652 1.35189 1.22015 0.95587 0.99892 0.89200 1.21525 0.96882 0.93482 1.02574 1.22367 0.99978 0.97797 0.98013 1.21263 0.93618 0.88723 0.97185 0.90292 1.58752 1.22067 1.03931 1.52892 1.21997 0.95499 0.89833 0.99155 0.92631 0.98121 1.02349 0.91935 0.97185 0.91407 0.89814 0.92345 0.89436 0.83063 0.84389 0.92599 0.96813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.52 -30.57 8.43 25.60 0.22 -30.35 16 8 H 0.06 3.70 7.12 -2.91 -0.02 3.67 16 9 C 0.21 11.66 4.72 85.56 0.40 12.07 16 10 N -0.54 -24.67 4.65 -900.93 -4.19 -28.85 16 11 C 0.06 2.43 5.30 86.32 0.46 2.89 16 12 C -0.11 -3.07 6.09 30.65 0.19 -2.88 16 13 C -0.14 -3.48 5.58 30.68 0.17 -3.31 16 14 C 0.10 3.01 3.41 44.97 0.15 3.16 16 15 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 16 N -0.85 -19.69 9.26 -168.46 -1.56 -21.25 16 17 C 0.06 2.47 5.00 86.32 0.43 2.90 16 18 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 19 H 0.00 0.04 7.99 -2.38 -0.02 0.02 16 20 H -0.04 -2.50 8.12 -2.39 -0.02 -2.52 16 21 H 0.06 2.72 6.70 -2.39 -0.02 2.70 16 22 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.35 6.25 9.04 -89.69 -0.81 5.44 16 28 H 0.34 7.33 8.98 -89.70 -0.81 6.52 16 29 H 0.06 2.32 8.01 -2.39 -0.02 2.30 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -65.61 243.30 -1.45 -67.06 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -0.50 Total: 8.61 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 2.48 Total: -15.15 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -5.46 Total: -107.49 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.61 -1.45 -67.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041030025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.622 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds