Wall clock time and date at job start Thu Apr 9 2020 13:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52997 * 109.47566 * 120.00516 * 2 1 3 5 5 C 1.53006 * 115.54703 * 305.69007 * 4 2 1 6 6 H 1.09000 * 109.47121 * 53.03460 * 5 4 2 7 7 O 1.42892 * 109.47010 * 293.03491 * 5 4 2 8 8 C 1.50702 * 109.47043 * 173.03186 * 5 4 2 9 9 H 1.07997 * 120.00033 * 5.40900 * 8 5 4 10 10 C 1.37882 * 119.99596 * 185.13671 * 8 5 4 11 11 N 1.31508 * 120.00088 * 0.27670 * 10 8 5 12 12 Si 1.86800 * 119.99633 * 180.27519 * 10 8 5 13 13 H 1.48499 * 109.47295 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47081 * 119.99930 * 12 10 8 15 15 H 1.48497 * 109.47193 * 240.00192 * 12 10 8 16 16 C 1.53007 * 117.50058 * 91.35591 * 4 2 1 17 17 C 1.52997 * 117.50292 * 160.02016 * 4 2 1 18 18 H 1.08996 * 109.46987 * 299.95009 * 1 2 3 19 19 H 1.08996 * 109.46997 * 59.95581 * 1 2 3 20 20 H 1.09004 * 109.46754 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47106 * 240.00408 * 2 1 3 22 22 H 1.09006 * 109.46950 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47108 * 300.00116 * 3 2 1 24 24 H 1.09002 * 109.46809 * 60.00226 * 3 2 1 25 25 H 0.96701 * 113.99911 * 299.99334 * 7 5 4 26 26 H 0.97002 * 119.99850 * 180.02562 * 11 10 8 27 27 H 1.08996 * 117.49742 * 215.00601 * 16 4 2 28 28 H 1.08994 * 117.49582 * 0.02743 * 16 4 2 29 29 H 1.08999 * 117.49988 * 359.97045 * 17 4 2 30 30 H 1.08996 * 117.49975 * 144.97740 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5008 -0.1958 2.5810 6 1 0.4116 -0.1726 2.5482 7 8 1.9987 1.1241 2.8089 8 6 1.9506 -1.1022 3.6978 9 1 2.6308 -1.9155 3.4925 10 6 1.4979 -0.8897 4.9828 11 7 0.6695 0.1006 5.2328 12 14 2.0614 -2.0085 6.3685 13 1 2.9857 -3.0379 5.8288 14 1 2.7650 -1.2038 7.3993 15 1 0.8820 -2.6729 6.9790 16 6 2.3060 -2.2240 1.1382 17 6 3.4781 -1.2433 1.2258 18 1 -0.3633 0.5130 0.8904 19 1 -0.3633 0.5145 -0.8896 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 3.1301 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 2.9632 1.1790 2.8501 26 1 0.3514 0.2504 6.1368 27 1 2.0967 -2.8381 2.0140 28 1 2.1179 -2.6986 0.1751 29 1 4.0606 -1.0733 0.3204 30 1 4.0400 -1.2121 2.1592 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642842686.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:05 Heat of formation + Delta-G solvation = -42.768359 kcal Electronic energy + Delta-G solvation = -11924.211778 eV Core-core repulsion = 9912.826764 eV Total energy + Delta-G solvation = -2011.385014 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -38.40933 -34.18878 -32.81738 -31.96555 -26.98637 -26.30041 -23.52709 -21.44841 -21.34867 -17.77698 -17.02322 -14.98122 -14.42007 -14.30135 -13.80117 -13.14665 -13.00581 -12.37637 -12.20436 -11.61208 -11.24304 -10.94620 -10.79443 -10.65967 -10.57309 -10.42715 -10.29662 -10.05360 -9.52114 -8.84439 -8.69292 -8.46408 -7.91175 -5.98152 -4.13091 3.27915 3.36575 3.39363 4.41498 4.67325 5.30008 5.41110 5.58577 5.74979 5.84894 6.05381 6.11187 6.25228 6.28175 6.40992 6.43990 6.55229 6.61557 6.77225 6.80100 6.96418 7.06363 7.12549 7.27634 7.81002 7.92990 8.27650 8.91362 9.44016 9.63330 11.07054 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050798 B = 0.014217 C = 0.012875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.075887 B = 1968.978029 C = 2174.304322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.147 4.147 4 C -0.135 4.135 5 C 0.263 3.737 6 H 0.065 0.935 7 O -0.562 6.562 8 C -0.566 4.566 9 H 0.063 0.937 10 C 0.078 3.922 11 N -0.864 5.864 12 Si 0.885 3.115 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.172 4.172 17 C -0.177 4.177 18 H 0.065 0.935 19 H 0.041 0.959 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.343 0.657 26 H 0.259 0.741 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -1.047 -7.367 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.204 4.204 4 C -0.136 4.136 5 C 0.206 3.794 6 H 0.082 0.918 7 O -0.365 6.365 8 C -0.604 4.604 9 H 0.081 0.919 10 C -0.127 4.127 11 N -0.501 5.501 12 Si 0.713 3.287 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.209 4.209 17 C -0.214 4.214 18 H 0.084 0.916 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.187 0.813 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.639 -0.810 -7.237 7.465 hybrid contribution 0.903 -0.922 0.791 1.513 sum 2.542 -1.732 -6.447 7.143 Atomic orbital electron populations 1.21791 0.95666 1.01187 1.01323 1.20535 0.95319 0.95922 0.95251 1.21902 1.00167 0.96248 1.02059 1.22556 0.97505 0.94885 0.98638 1.18864 0.94588 0.80259 0.85702 0.91776 1.86525 1.23363 1.31793 1.94820 1.21866 1.29918 1.15253 0.93328 0.91940 1.25044 0.94295 0.94619 0.98783 1.70064 1.31053 1.28673 1.20309 0.86678 0.78615 0.80912 0.82543 1.19759 1.21008 1.21002 1.22978 1.03314 0.93116 1.01512 1.22840 0.91392 1.05637 1.01561 0.91628 0.93975 0.93266 0.93404 0.93764 0.94646 0.89710 0.81340 0.93136 0.87776 0.91108 0.91025 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.81 37.16 0.33 -2.17 16 2 C -0.05 -0.93 2.76 -90.62 -0.25 -1.18 16 3 C -0.15 -2.52 8.72 37.16 0.32 -2.20 16 4 C -0.14 -2.76 1.40 -154.50 -0.22 -2.98 16 5 C 0.26 6.52 2.49 -27.88 -0.07 6.45 16 6 H 0.06 1.78 6.61 -51.93 -0.34 1.44 16 7 O -0.56 -14.05 10.46 -35.23 -0.37 -14.42 16 8 C -0.57 -15.14 7.36 -34.44 -0.25 -15.40 16 9 H 0.06 1.63 5.12 -52.49 -0.27 1.36 16 10 C 0.08 2.16 5.42 -17.82 -0.10 2.07 16 11 N -0.86 -25.48 13.06 55.43 0.72 -24.75 16 12 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 C -0.17 -3.34 9.36 -26.69 -0.25 -3.59 16 17 C -0.18 -3.36 9.46 -26.69 -0.25 -3.61 16 18 H 0.06 1.28 6.70 -51.93 -0.35 0.94 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.65 5.99 -51.93 -0.31 1.34 16 25 H 0.34 7.79 9.04 45.56 0.41 8.21 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.10 2.19 6.36 -51.93 -0.33 1.86 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.94 7.12 -51.93 -0.37 1.57 16 LS Contribution 242.36 15.07 3.65 3.65 Total: -1.00 -28.72 242.36 -5.40 -34.12 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.65 Total: 7.83 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -0.74 Total: -22.60 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.72 Total: -24.75 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.37 Total: -14.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.72 -5.40 -34.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842686.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.645 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds