Wall clock time and date at job start Thu Apr 9 2020 13:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52997 * 109.47566 * 120.00516 * 2 1 3 5 5 C 1.53006 * 115.54703 * 305.69007 * 4 2 1 6 6 H 1.09000 * 109.47121 * 53.03460 * 5 4 2 7 7 O 1.42892 * 109.47010 * 293.03491 * 5 4 2 8 8 C 1.50702 * 109.47043 * 173.03186 * 5 4 2 9 9 H 1.07997 * 120.00033 * 5.40900 * 8 5 4 10 10 C 1.37882 * 119.99596 * 185.13671 * 8 5 4 11 11 N 1.31508 * 120.00088 * 0.27670 * 10 8 5 12 12 Si 1.86800 * 119.99633 * 180.27519 * 10 8 5 13 13 H 1.48499 * 109.47295 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47081 * 119.99930 * 12 10 8 15 15 H 1.48497 * 109.47193 * 240.00192 * 12 10 8 16 16 C 1.53007 * 117.50058 * 91.35591 * 4 2 1 17 17 C 1.52997 * 117.50292 * 160.02016 * 4 2 1 18 18 H 1.08996 * 109.46987 * 299.95009 * 1 2 3 19 19 H 1.08996 * 109.46997 * 59.95581 * 1 2 3 20 20 H 1.09004 * 109.46754 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47106 * 240.00408 * 2 1 3 22 22 H 1.09006 * 109.46950 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47108 * 300.00116 * 3 2 1 24 24 H 1.09002 * 109.46809 * 60.00226 * 3 2 1 25 25 H 0.96701 * 113.99911 * 299.99334 * 7 5 4 26 26 H 0.97002 * 119.99850 * 180.02562 * 11 10 8 27 27 H 1.08996 * 117.49742 * 215.00601 * 16 4 2 28 28 H 1.08994 * 117.49582 * 0.02743 * 16 4 2 29 29 H 1.08999 * 117.49988 * 359.97045 * 17 4 2 30 30 H 1.08996 * 117.49975 * 144.97740 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5008 -0.1958 2.5810 6 1 0.4116 -0.1726 2.5482 7 8 1.9987 1.1241 2.8089 8 6 1.9506 -1.1022 3.6978 9 1 2.6308 -1.9155 3.4925 10 6 1.4979 -0.8897 4.9828 11 7 0.6695 0.1006 5.2328 12 14 2.0614 -2.0085 6.3685 13 1 2.9857 -3.0379 5.8288 14 1 2.7650 -1.2038 7.3993 15 1 0.8820 -2.6729 6.9790 16 6 2.3060 -2.2240 1.1382 17 6 3.4781 -1.2433 1.2258 18 1 -0.3633 0.5130 0.8904 19 1 -0.3633 0.5145 -0.8896 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 3.1301 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 2.9632 1.1790 2.8501 26 1 0.3514 0.2504 6.1368 27 1 2.0967 -2.8381 2.0140 28 1 2.1179 -2.6986 0.1751 29 1 4.0606 -1.0733 0.3204 30 1 4.0400 -1.2121 2.1592 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842686.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:04 Heat of formation + Delta-G solvation = -61.426509 kcal Electronic energy + Delta-G solvation = -11925.020856 eV Core-core repulsion = 9912.826764 eV Total energy + Delta-G solvation = -2012.194092 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05391 -36.08299 -34.48405 -33.87069 -28.90790 -27.80208 -25.39777 -22.97420 -22.94564 -19.44009 -19.05324 -16.83144 -16.26046 -15.98064 -15.54851 -14.93961 -14.55898 -14.05886 -13.80114 -13.23162 -12.86365 -12.77444 -12.71715 -12.28319 -12.11025 -12.01129 -11.90887 -11.79146 -11.16763 -10.74041 -10.43276 -10.33520 -9.81100 -8.10089 -6.31010 1.37774 1.40035 1.50796 2.40340 3.08868 3.21539 3.94680 4.07966 4.25811 4.30227 4.50470 4.67469 4.70497 4.86550 4.93129 4.94646 5.15292 5.18047 5.21563 5.28039 5.51232 5.53764 5.56207 5.69953 5.79294 5.91195 6.21911 6.82802 7.40182 7.62176 8.95445 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050798 B = 0.014217 C = 0.012875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.075887 B = 1968.978029 C = 2174.304322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.147 4.147 5 C 0.265 3.735 6 H 0.024 0.976 7 O -0.574 6.574 8 C -0.570 4.570 9 H 0.068 0.932 10 C 0.022 3.978 11 N -0.907 5.907 12 Si 0.952 3.048 13 H -0.263 1.263 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.170 4.170 17 C -0.162 4.162 18 H 0.031 0.969 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.351 0.649 26 H 0.258 0.742 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -1.927 -8.762 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.148 4.148 5 C 0.208 3.792 6 H 0.042 0.958 7 O -0.378 6.378 8 C -0.608 4.608 9 H 0.086 0.914 10 C -0.179 4.179 11 N -0.546 5.546 12 Si 0.777 3.223 13 H -0.187 1.187 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.207 4.207 17 C -0.199 4.199 18 H 0.050 0.950 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.196 0.804 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.831 -1.702 -8.640 9.250 hybrid contribution 0.524 -0.630 1.197 1.450 sum 3.356 -2.332 -7.443 8.491 Atomic orbital electron populations 1.21758 0.95802 1.01162 1.00977 1.20568 0.95242 0.96241 0.94747 1.21819 1.00644 0.95704 1.01677 1.22325 0.99065 0.95958 0.97426 1.18613 0.92597 0.79994 0.88007 0.95847 1.86488 1.24097 1.32003 1.95183 1.22256 1.29183 1.15292 0.94026 0.91413 1.25873 0.94498 0.96017 1.01511 1.70206 1.32807 1.30796 1.20754 0.85624 0.78175 0.79096 0.79364 1.18696 1.20873 1.20853 1.22984 1.03371 0.92238 1.02071 1.22847 0.90621 1.04212 1.02197 0.94974 0.91237 0.93184 0.90778 0.92919 0.92308 0.92757 0.80416 0.93282 0.90054 0.88177 0.87936 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.81 71.98 0.63 -4.09 16 2 C -0.05 -1.67 2.76 -10.79 -0.03 -1.70 16 3 C -0.14 -4.56 8.72 71.98 0.63 -3.93 16 4 C -0.15 -5.82 1.40 -52.18 -0.07 -5.89 16 5 C 0.26 13.37 2.49 29.85 0.07 13.44 16 6 H 0.02 1.38 6.61 -2.39 -0.02 1.36 16 7 O -0.57 -29.28 10.46 -148.98 -1.56 -30.84 16 8 C -0.57 -30.74 7.36 25.60 0.19 -30.55 16 9 H 0.07 3.52 5.12 -2.91 -0.01 3.50 16 10 C 0.02 1.24 5.42 84.66 0.46 1.70 16 11 N -0.91 -54.85 13.06 21.45 0.28 -54.57 16 12 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 C -0.17 -6.20 9.36 30.62 0.29 -5.92 16 17 C -0.16 -5.70 9.46 30.62 0.29 -5.41 16 18 H 0.03 1.28 6.70 -2.39 -0.02 1.26 16 19 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 21 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 22 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 2.09 5.99 -2.39 -0.01 2.08 16 25 H 0.35 16.14 9.04 -74.06 -0.67 15.48 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.08 3.34 6.36 -2.39 -0.02 3.33 16 28 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.08 3.09 7.12 -2.39 -0.02 3.07 16 Total: -1.00 -61.75 242.36 3.66 -58.09 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.45 Total: 23.78 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 2.46 Total: -42.34 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.56 Total: -30.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.75 3.66 -58.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842686.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.332 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds