Wall clock time and date at job start Thu Apr 9 2020 13:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 C 1.53000 * 112.85002 * 168.99231 * 3 2 1 5 5 H 1.08999 * 109.46988 * 177.61889 * 4 3 2 6 6 O 1.42892 * 109.47317 * 57.61211 * 4 3 2 7 7 C 1.50703 * 109.47010 * 297.61265 * 4 3 2 8 8 H 1.07999 * 119.99941 * 5.17165 * 7 4 3 9 9 C 1.37880 * 120.00244 * 185.17089 * 7 4 3 10 10 N 1.31516 * 119.99359 * 0.02562 * 9 7 4 11 11 Si 1.86790 * 120.00189 * 180.02562 * 9 7 4 12 12 H 1.48502 * 109.47207 * 90.00073 * 11 9 7 13 13 H 1.48499 * 109.47269 * 210.00093 * 11 9 7 14 14 H 1.48502 * 109.47465 * 330.00124 * 11 9 7 15 15 C 1.53780 * 113.61352 * 37.68660 * 3 2 1 16 16 C 1.53778 * 87.08088 * 220.02002 * 15 3 2 17 17 C 1.53775 * 113.61278 * 300.18753 * 3 2 1 18 18 H 1.09003 * 109.47400 * 53.50416 * 1 2 3 19 19 H 1.09004 * 109.47444 * 173.50979 * 1 2 3 20 20 H 1.09007 * 109.47227 * 293.50811 * 1 2 3 21 21 H 1.08997 * 109.47350 * 119.99679 * 2 1 3 22 22 H 1.08999 * 109.47054 * 240.00411 * 2 1 3 23 23 H 0.96695 * 114.00289 * 300.00287 * 6 4 3 24 24 H 0.97003 * 119.99621 * 179.97438 * 10 9 7 25 25 H 1.09002 * 113.61332 * 334.56447 * 15 3 2 26 26 H 1.08997 * 113.61842 * 105.46818 * 15 3 2 27 27 H 1.09000 * 113.61687 * 270.88524 * 16 15 3 28 28 H 1.08997 * 113.61680 * 139.97768 * 16 15 3 29 29 H 1.08996 * 113.61539 * 254.52697 * 17 3 2 30 30 H 1.09000 * 113.61936 * 25.35130 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5428 1.5414 0.2692 5 1 3.8538 2.5847 0.2151 6 8 4.2532 0.7811 -0.7102 7 6 3.8440 0.9981 1.6423 8 1 3.0581 0.5440 2.2276 9 6 5.1227 1.0807 2.1512 10 7 6.0795 1.6342 1.4385 11 14 5.4961 0.4067 3.8528 12 1 5.8987 -1.0185 3.7433 13 1 6.6018 1.1879 4.4630 14 1 4.2847 0.5148 4.7049 15 6 1.1940 2.3950 0.8614 16 6 1.3785 3.4395 -0.2520 17 6 1.5773 2.2594 -1.2179 18 1 -0.3634 0.6112 -0.8261 19 1 -0.3634 -1.0211 -0.1162 20 1 -0.3634 0.4099 0.9424 21 1 1.8933 -0.5138 0.8900 22 1 1.8932 -0.5138 -0.8900 23 1 4.0261 -0.1588 -0.7191 24 1 6.9791 1.6926 1.7967 25 1 0.1615 2.0690 0.9874 26 1 1.6694 2.6713 1.8025 27 1 2.2682 4.0570 -0.1284 28 1 0.4813 4.0240 -0.4556 29 1 2.3622 2.4264 -1.9555 30 1 0.6504 1.8956 -1.6613 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686138122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:13 Heat of formation + Delta-G solvation = -66.424030 kcal Electronic energy + Delta-G solvation = -11944.945898 eV Core-core repulsion = 9932.535097 eV Total energy + Delta-G solvation = -2012.410801 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77487 -36.62670 -34.25543 -32.97061 -29.51442 -26.71779 -26.00671 -23.84607 -22.73582 -18.96549 -18.72990 -16.86892 -16.67569 -16.13355 -15.37584 -15.27252 -14.74827 -14.20407 -13.72251 -13.40435 -12.82596 -12.73454 -12.62886 -12.48942 -12.35618 -11.98961 -11.69617 -11.60598 -11.03183 -10.79826 -10.65164 -10.44779 -9.91588 -8.11130 -6.33195 1.39359 1.39748 1.50484 2.40071 3.14923 3.88926 3.94317 4.01537 4.11579 4.34624 4.43549 4.65973 4.71288 4.90441 4.95770 5.02513 5.11398 5.18481 5.28598 5.30091 5.41351 5.52484 5.63901 5.67709 5.79813 5.95960 6.20254 6.80286 7.37596 7.57286 8.94439 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.046124 B = 0.014186 C = 0.013351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.916108 B = 1973.344240 C = 2096.710830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.102 4.102 4 C 0.250 3.750 5 H 0.015 0.985 6 O -0.587 6.587 7 C -0.561 4.561 8 H 0.061 0.939 9 C 0.019 3.981 10 N -0.910 5.910 11 Si 0.955 3.045 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.264 1.264 15 C -0.128 4.128 16 C -0.136 4.136 17 C -0.129 4.129 18 H 0.063 0.937 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.354 0.646 24 H 0.259 0.741 25 H 0.103 0.897 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 -1.519 -1.534 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.102 4.102 4 C 0.193 3.807 5 H 0.033 0.967 6 O -0.391 6.391 7 C -0.599 4.599 8 H 0.079 0.921 9 C -0.182 4.182 10 N -0.548 5.548 11 Si 0.780 3.220 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.188 1.188 15 C -0.165 4.165 16 C -0.174 4.174 17 C -0.166 4.166 18 H 0.082 0.918 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.199 0.801 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.323 -0.867 -1.667 10.492 hybrid contribution 0.677 -0.619 1.016 1.368 sum -9.646 -1.486 -0.651 9.781 Atomic orbital electron populations 1.21846 0.94359 1.01826 1.01987 1.21265 0.96640 0.95286 1.00924 1.22459 0.96130 0.95065 0.96594 1.19010 0.85464 0.90373 0.85884 0.96685 1.86482 1.69842 1.22523 1.60295 1.21981 0.94847 1.40252 1.02800 0.92057 1.25931 0.96529 0.94828 1.00896 1.70212 1.01777 1.44186 1.38667 0.85622 0.77948 0.78396 0.80017 1.19942 1.21195 1.18791 1.23020 1.00172 0.96462 0.96891 1.22705 1.01087 0.96277 0.97293 1.22993 1.00808 0.96802 0.96013 0.91813 0.92006 0.92459 0.93176 0.92659 0.80075 0.93210 0.87927 0.93725 0.92875 0.89609 0.93895 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.80 71.98 0.63 -3.11 16 2 C -0.10 -3.58 4.92 30.59 0.15 -3.43 16 3 C -0.10 -4.05 0.60 -51.66 -0.03 -4.08 16 4 C 0.25 12.94 2.18 29.85 0.07 13.01 16 5 H 0.02 0.91 7.31 -2.39 -0.02 0.89 16 6 O -0.59 -31.36 12.99 -148.98 -1.94 -33.30 16 7 C -0.56 -30.84 7.59 25.60 0.19 -30.64 16 8 H 0.06 3.26 6.88 -2.91 -0.02 3.24 16 9 C 0.02 1.08 5.42 84.66 0.46 1.54 16 10 N -0.91 -55.86 13.05 21.45 0.28 -55.58 16 11 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 15 C -0.13 -4.60 6.77 31.12 0.21 -4.39 16 16 C -0.14 -4.60 7.73 31.12 0.24 -4.36 16 17 C -0.13 -4.46 7.04 31.12 0.22 -4.24 16 18 H 0.06 1.51 6.23 -2.39 -0.01 1.49 16 19 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 20 H 0.06 1.46 6.51 -2.38 -0.02 1.44 16 21 H 0.05 1.93 6.73 -2.39 -0.02 1.91 16 22 H 0.05 1.85 7.60 -2.39 -0.02 1.83 16 23 H 0.35 16.72 7.85 -74.06 -0.58 16.14 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.10 3.04 5.61 -2.39 -0.01 3.02 16 26 H 0.04 1.82 7.75 -2.39 -0.02 1.80 16 27 H 0.05 2.03 7.60 -2.39 -0.02 2.01 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 30 H 0.10 2.82 6.31 -2.39 -0.02 2.80 16 Total: -1.00 -64.21 237.05 3.06 -61.15 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.54 Total: 21.27 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 2.14 Total: -39.70 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.94 Total: -33.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.21 3.06 -61.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686138122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.272 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds