Wall clock time and date at job start Thu Apr 9 2020 13:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47062 * 2 1 4 4 N 1.46899 * 109.47122 * 119.99845 * 2 1 3 5 5 C 1.53004 * 109.47166 * 240.00056 * 2 1 3 6 6 H 1.09004 * 110.88351 * 62.42751 * 5 2 1 7 7 C 1.55154 * 111.00250 * 186.34717 * 5 2 1 8 8 C 1.54339 * 103.01885 * 153.38358 * 7 5 2 9 9 N 1.47024 * 107.26371 * 338.13833 * 8 7 5 10 10 C 1.36938 * 125.65062 * 178.84880 * 9 8 7 11 11 H 1.07999 * 120.00325 * 179.69247 * 10 9 8 12 12 C 1.38815 * 119.99817 * 359.69893 * 10 9 8 13 13 N 1.31621 * 119.99673 * 359.71804 * 12 10 9 14 14 Si 1.86795 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47274 * 89.99913 * 14 12 10 16 16 H 1.48505 * 109.47015 * 209.99478 * 14 12 10 17 17 H 1.48498 * 109.47362 * 329.99904 * 14 12 10 18 18 C 1.47424 * 108.70266 * 358.58822 * 9 8 7 19 19 H 1.08996 * 109.46892 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46756 * 299.99697 * 1 2 3 21 21 H 1.09000 * 109.47132 * 59.99785 * 1 2 3 22 22 H 1.00894 * 111.00554 * 296.04779 * 4 2 1 23 23 H 1.00897 * 110.99843 * 60.00581 * 4 2 1 24 24 H 1.08996 * 110.72181 * 271.93507 * 7 5 2 25 25 H 1.09001 * 110.72157 * 35.04107 * 7 5 2 26 26 H 1.09002 * 109.99054 * 218.67359 * 8 7 5 27 27 H 1.08994 * 109.78097 * 97.49815 * 8 7 5 28 28 H 0.97000 * 120.00043 * 180.02562 * 13 12 10 29 29 H 1.09005 * 110.36729 * 143.19291 * 18 9 8 30 30 H 1.09001 * 110.37054 * 265.51268 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0401 -0.7213 -1.2493 6 1 1.7252 -0.2012 -2.1540 7 6 3.5827 -0.8821 -1.2077 8 6 3.8250 -2.1358 -2.0747 9 7 2.5682 -2.8982 -2.1003 10 6 2.3579 -4.0677 -2.7808 11 1 1.3955 -4.5555 -2.7319 12 6 3.3817 -4.6265 -3.5335 13 7 4.5528 -4.0292 -3.5975 14 14 3.0951 -6.2223 -4.4612 15 1 2.5935 -5.9185 -5.8255 16 1 4.3721 -6.9739 -4.5594 17 1 2.0920 -7.0430 -3.7364 18 6 1.5737 -2.1983 -1.2669 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.7503 -0.1990 2.0372 23 1 1.6963 -1.6479 1.2227 24 1 4.0732 -0.0104 -1.6407 25 1 3.9257 -1.0485 -0.1865 26 1 4.6180 -2.7431 -1.6383 27 1 4.0982 -1.8372 -3.0867 28 1 5.2682 -4.4194 -4.1238 29 1 0.5820 -2.2777 -1.7126 30 1 1.5702 -2.6072 -0.2565 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157392380.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:38 Heat of formation + Delta-G solvation = -4.262520 kcal Electronic energy + Delta-G solvation = -11704.651615 eV Core-core repulsion = 9727.229090 eV Total energy + Delta-G solvation = -1977.422524 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.76218 -36.47537 -33.91049 -31.09182 -29.95913 -28.39901 -26.64004 -23.47250 -21.79349 -20.11198 -18.87064 -17.65892 -16.64669 -15.90273 -15.44893 -15.05799 -14.26413 -14.07058 -13.91190 -13.61143 -13.38699 -12.92651 -12.81373 -12.57189 -12.35050 -12.00290 -11.74821 -11.41777 -11.28132 -11.14237 -10.69772 -9.44084 -8.86211 -7.83492 -5.19378 1.44150 1.47108 1.55824 2.50038 3.33632 3.67491 3.76684 3.95713 4.10590 4.28102 4.47806 4.52975 4.61997 4.79833 4.85732 5.02175 5.08652 5.20572 5.26329 5.38574 5.45960 5.53286 5.75650 5.83713 6.21588 6.38963 6.76381 7.11483 7.80300 8.46319 9.26927 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.073680 B = 0.010821 C = 0.010021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.932181 B = 2586.832939 C = 2793.505571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 H 0.090 0.910 4 N -0.849 5.849 5 C -0.087 4.087 6 H 0.070 0.930 7 C -0.120 4.120 8 C 0.185 3.815 9 N -0.629 5.629 10 C -0.244 4.244 11 H 0.082 0.918 12 C -0.072 4.072 13 N -0.953 5.953 14 Si 0.981 3.019 15 H -0.285 1.285 16 H -0.294 1.294 17 H -0.267 1.267 18 C 0.141 3.859 19 H 0.048 0.952 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.349 0.651 23 H 0.339 0.661 24 H 0.067 0.933 25 H 0.080 0.920 26 H -0.002 1.002 27 H 0.004 0.996 28 H 0.246 0.754 29 H 0.033 0.967 30 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 7.815 7.499 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.004 4.004 3 H 0.108 0.892 4 N -0.381 5.381 5 C -0.107 4.107 6 H 0.088 0.912 7 C -0.158 4.158 8 C 0.060 3.940 9 N -0.356 5.356 10 C -0.373 4.373 11 H 0.100 0.900 12 C -0.264 4.264 13 N -0.602 5.602 14 Si 0.809 3.191 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.192 1.192 18 C 0.016 3.984 19 H 0.067 0.933 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.163 0.837 23 H 0.153 0.847 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.017 0.983 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.323 7.815 7.091 12.302 hybrid contribution -0.731 -1.150 -0.585 1.483 sum -7.054 6.665 6.506 11.684 Atomic orbital electron populations 1.22567 0.96611 1.01942 1.02795 1.21183 0.92631 0.97556 0.89064 0.89210 1.58847 1.67876 1.06815 1.04539 1.22327 0.95433 0.95016 0.97889 0.91192 1.22686 0.96023 0.96667 1.00403 1.20896 0.87473 0.90109 0.95517 1.44837 1.10085 1.24890 1.55748 1.19506 0.97648 0.98441 1.21740 0.90015 1.25729 0.95831 1.02844 1.02022 1.70237 1.03532 1.41070 1.45399 0.85035 0.76701 0.78920 0.78420 1.21212 1.22032 1.19204 1.21715 0.91753 0.91610 0.93327 0.93320 0.91052 0.91963 0.83704 0.84655 0.91481 0.90100 0.98338 0.97808 0.94507 0.94827 0.95478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 9.28 71.98 0.67 -3.16 16 2 C 0.11 2.72 3.32 44.92 0.15 2.87 16 3 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 4 N -0.85 -20.93 8.05 -168.66 -1.36 -22.29 16 5 C -0.09 -3.02 2.99 -9.40 -0.03 -3.05 16 6 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 7 C -0.12 -4.76 6.35 31.79 0.20 -4.56 16 8 C 0.19 9.88 5.38 86.73 0.47 10.34 16 9 N -0.63 -34.21 3.39 -691.96 -2.35 -36.56 16 10 C -0.24 -14.35 10.28 84.03 0.86 -13.49 16 11 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 12 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 13 N -0.95 -60.18 10.31 21.65 0.22 -59.95 16 14 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 15 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 16 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C 0.14 5.90 5.61 86.85 0.49 6.39 16 19 H 0.05 1.13 7.27 -2.39 -0.02 1.12 16 20 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.35 6.51 9.07 -89.70 -0.81 5.69 16 23 H 0.34 9.01 6.90 -89.70 -0.62 8.39 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.08 3.15 7.08 -2.39 -0.02 3.13 16 26 H 0.00 -0.10 7.53 -2.39 -0.02 -0.12 16 27 H 0.00 0.22 7.36 -2.39 -0.02 0.20 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.03 1.38 8.05 -2.38 -0.02 1.36 16 30 H 0.03 1.10 6.03 -2.39 -0.01 1.09 16 Total: -1.00 -68.08 237.44 1.51 -66.57 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -0.31 Total: 11.33 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 3.27 Total: -8.45 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -3.48 Total: -118.81 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -68.08 1.51 -66.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157392380.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.309 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds