Wall clock time and date at job start Thu Apr 9 2020 13:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.46471 * 119.99643 * 2 1 3 13 13 H 1.09003 * 109.47650 * 179.97438 * 12 2 1 14 14 C 1.53093 * 109.48250 * 300.02025 * 12 2 1 15 15 C 1.53172 * 109.16166 * 177.59575 * 14 12 2 16 16 C 1.53176 * 109.03844 * 303.01844 * 15 14 12 17 17 C 1.53087 * 109.16199 * 56.98105 * 16 15 14 18 18 O 1.42899 * 109.48280 * 59.97680 * 12 2 1 19 19 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 21 21 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 22 22 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 23 23 H 1.09001 * 109.52051 * 297.50451 * 14 12 2 24 24 H 1.08998 * 109.52077 * 57.62519 * 14 12 2 25 25 H 1.09002 * 109.54681 * 62.89296 * 15 14 12 26 26 H 1.09009 * 109.54062 * 183.15425 * 15 14 12 27 27 H 1.08993 * 109.52526 * 176.88934 * 16 15 14 28 28 H 1.09000 * 109.52529 * 297.08083 * 16 15 14 29 29 H 1.08999 * 109.48331 * 62.37473 * 17 16 15 30 30 H 1.09002 * 109.48509 * 182.39885 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0399 -0.7212 1.2494 13 1 3.1299 -0.7217 1.2493 14 6 1.5292 0.0001 2.4994 15 6 1.9935 -0.7618 3.7445 16 6 1.4924 -2.2069 3.6617 17 6 2.0045 -2.8430 2.3668 18 8 1.5632 -2.0683 1.2499 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 0.7173 1.1669 -3.4844 23 1 1.9279 1.0143 2.5232 24 1 0.4401 0.0373 2.4791 25 1 3.0825 -0.7556 3.7909 26 1 1.5866 -0.2853 4.6364 27 1 1.8648 -2.7712 4.5167 28 1 0.4025 -2.2153 3.6653 29 1 3.0940 -2.8710 2.3816 30 1 1.6159 -3.8578 2.2817 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213690107.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:09 Heat of formation + Delta-G solvation = -68.690876 kcal Electronic energy + Delta-G solvation = -11814.190472 eV Core-core repulsion = 9801.681373 eV Total energy + Delta-G solvation = -2012.509099 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.73951 -34.18908 -32.97965 -31.41519 -28.39395 -25.12462 -24.26429 -22.94676 -20.27851 -18.93236 -16.12586 -15.46992 -15.04211 -14.50972 -14.04621 -13.90476 -13.25234 -12.26833 -12.05043 -11.96814 -11.62764 -10.96734 -10.86988 -10.82784 -10.48518 -10.31473 -10.06165 -9.97021 -9.73521 -8.92969 -8.83561 -8.44735 -8.22304 -5.86662 -3.90489 3.40174 3.43745 3.47695 4.54028 4.67253 5.19950 5.25462 5.33022 5.45435 5.63419 5.77659 5.92940 6.05544 6.15764 6.30035 6.34308 6.39761 6.48153 6.82675 6.84658 7.05659 7.31449 7.47925 7.79814 8.01696 8.23701 8.28574 8.60806 9.11219 9.72213 11.19658 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063707 B = 0.011968 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.408983 B = 2339.035238 C = 2584.920434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.056 0.944 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.102 3.898 13 H 0.040 0.960 14 C -0.154 4.154 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.056 3.944 18 O -0.357 6.357 19 H 0.033 0.967 20 H 0.006 0.994 21 H 0.078 0.922 22 H 0.258 0.742 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -3.331 9.649 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.074 0.926 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.044 3.956 13 H 0.058 0.942 14 C -0.192 4.192 15 C -0.159 4.159 16 C -0.191 4.191 17 C -0.022 4.022 18 O -0.275 6.275 19 H 0.052 0.948 20 H 0.025 0.975 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.171 -3.284 9.353 9.982 hybrid contribution 0.497 -0.371 -0.550 0.829 sum 1.668 -3.655 8.803 9.677 Atomic orbital electron populations 1.21751 0.98289 0.99484 0.99489 1.18747 0.93482 0.94685 0.89907 0.94643 1.21091 1.30498 1.11723 0.90270 0.92564 1.24950 0.95382 0.95092 0.98884 1.69880 1.37361 1.23168 1.23162 0.86675 0.79059 0.79856 0.82468 1.20345 1.21480 1.20466 1.22369 0.96095 0.81491 0.95633 0.94244 1.22337 1.02327 0.99286 0.95231 1.21598 1.00314 0.95589 0.98374 1.22173 1.01666 0.96776 0.98527 1.22440 0.97753 0.95239 0.86749 1.88118 1.73482 1.23380 1.42560 0.94826 0.97505 0.90354 0.93178 0.91694 0.90942 0.92480 0.92513 0.92062 0.91462 0.94315 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.48 37.16 0.32 -3.05 16 2 C 0.05 1.30 2.19 -91.77 -0.20 1.09 16 3 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.50 -14.25 8.22 -34.44 -0.28 -14.53 16 5 H 0.06 1.62 7.70 -52.49 -0.40 1.22 16 6 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 7 N -0.90 -26.39 11.33 55.43 0.63 -25.76 16 8 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.10 2.22 2.32 -26.68 -0.06 2.16 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.15 -2.79 5.13 -26.59 -0.14 -2.93 16 15 C -0.12 -1.80 6.03 -26.55 -0.16 -1.96 16 16 C -0.15 -2.21 6.14 -26.60 -0.16 -2.38 16 17 C 0.06 0.93 6.84 37.20 0.25 1.19 16 18 O -0.36 -7.86 9.32 -35.23 -0.33 -8.18 16 19 H 0.03 0.86 7.68 -51.93 -0.40 0.46 16 20 H 0.01 0.14 6.38 -51.93 -0.33 -0.19 16 21 H 0.08 2.17 6.08 -51.93 -0.32 1.86 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.07 1.36 6.31 -51.93 -0.33 1.03 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 237.90 15.07 3.59 3.59 Total: -1.00 -29.75 237.90 -6.38 -36.13 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.72 Total: -3.99 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.53 Total: -18.87 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.63 Total: -25.76 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.33 Total: -8.18 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.75 -6.38 -36.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213690107.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.558 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds