Wall clock time and date at job start Thu Apr 9 2020 13:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.50863 * 2 1 4 4 C 1.53051 * 109.48805 * 239.94315 * 2 1 3 5 5 N 1.46954 * 109.38452 * 181.64475 * 4 2 1 6 6 C 1.46956 * 110.87985 * 59.28391 * 5 4 2 7 7 H 1.08994 * 109.49150 * 60.69879 * 6 5 4 8 8 C 1.50703 * 109.48779 * 180.73729 * 6 5 4 9 9 H 1.08006 * 120.00159 * 119.95646 * 8 6 5 10 10 C 1.37877 * 120.00120 * 299.96015 * 8 6 5 11 11 N 1.31514 * 120.00089 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99938 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.53052 * 109.38639 * 300.71391 * 6 5 4 17 17 N 1.46956 * 109.36017 * 58.39045 * 16 6 5 18 18 C 1.46897 * 111.00025 * 176.81183 * 17 16 6 19 19 H 1.09006 * 109.47015 * 299.94405 * 1 2 3 20 20 H 1.09001 * 109.47507 * 59.94512 * 1 2 3 21 21 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.48759 * 301.60008 * 4 2 1 23 23 H 1.08997 * 109.48730 * 61.66157 * 4 2 1 24 24 H 1.00906 * 110.98198 * 295.43477 * 5 4 2 25 25 H 0.96998 * 119.99255 * 0.02562 * 11 10 8 26 26 H 1.08997 * 109.48991 * 178.36034 * 16 6 5 27 27 H 1.08998 * 109.48802 * 298.42930 * 16 6 5 28 28 H 1.09009 * 109.47234 * 56.04980 * 18 17 16 29 29 H 1.08997 * 109.47300 * 176.04420 * 18 17 16 30 30 H 1.08994 * 109.47498 * 296.04979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7227 -1.2488 5 7 3.5096 -0.7559 -1.2267 6 6 3.9998 -1.4492 -0.0273 7 1 3.6363 -2.4767 -0.0271 8 6 5.5069 -1.4492 -0.0274 9 1 6.0470 -0.9813 0.7825 10 6 6.1962 -2.0464 -1.0613 11 7 5.5387 -2.6165 -2.0473 12 14 8.0642 -2.0470 -1.0610 13 1 8.5598 -0.8347 -1.7610 14 1 8.5590 -3.2597 -1.7609 15 1 8.5590 -2.0472 0.3392 16 6 3.4893 -0.7265 1.2215 17 7 2.0203 -0.6938 1.1992 18 6 1.4889 -0.0739 2.4203 19 1 -0.3633 0.5130 0.8905 20 1 -0.3634 0.5147 -0.8895 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6543 -1.7418 -1.2626 23 1 1.7021 -0.1931 -2.1393 24 1 3.8930 0.1755 -1.2881 25 1 4.5687 -2.6164 -2.0472 26 1 3.8278 -1.2561 2.1120 27 1 3.8755 0.2927 1.2353 28 1 1.9150 0.9226 2.5370 29 1 0.4040 0.0013 2.3470 30 1 1.7533 -0.6854 3.2829 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218602095.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:15 Heat of formation + Delta-G solvation = -19.965056 kcal Electronic energy + Delta-G solvation = -11853.558345 eV Core-core repulsion = 9875.454908 eV Total energy + Delta-G solvation = -1978.103437 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.35888 -36.15946 -34.14399 -32.94259 -29.17856 -27.64754 -25.67072 -24.32517 -22.60815 -21.05096 -19.03161 -16.70637 -16.39799 -16.03370 -15.66152 -15.49578 -15.26846 -14.39409 -14.01163 -13.46340 -13.30847 -12.81626 -12.77911 -12.59829 -12.25972 -12.24252 -11.93249 -11.86800 -11.81262 -10.55037 -10.47271 -9.44030 -8.97272 -8.37595 -6.26849 1.56810 1.65754 1.82907 2.62716 2.94099 3.26351 3.74328 3.91868 4.08557 4.24249 4.27929 4.33738 4.54127 4.60491 4.62241 4.79070 4.83915 4.89063 4.96253 5.07385 5.18610 5.34670 5.85577 6.07065 6.17123 6.20501 6.61245 6.75868 6.88161 7.66093 8.95982 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.070669 B = 0.011794 C = 0.010536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.115885 B = 2373.459302 C = 2657.017577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.046 3.954 3 H 0.028 0.972 4 C 0.062 3.938 5 N -0.688 5.688 6 C 0.212 3.788 7 H -0.002 1.002 8 C -0.632 4.632 9 H 0.041 0.959 10 C -0.011 4.011 11 N -0.918 5.918 12 Si 1.116 2.884 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.052 3.948 17 N -0.552 5.552 18 C 0.022 3.978 19 H 0.069 0.931 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.324 0.676 25 H 0.278 0.722 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.020 0.980 29 H 0.091 0.909 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 6.264 4.968 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 H 0.046 0.954 4 C -0.068 4.068 5 N -0.316 5.316 6 C 0.104 3.896 7 H 0.016 0.984 8 C -0.670 4.670 9 H 0.060 0.940 10 C -0.215 4.215 11 N -0.553 5.553 12 Si 0.939 3.061 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.078 4.078 17 N -0.277 5.277 18 C -0.126 4.126 19 H 0.087 0.913 20 H 0.095 0.905 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.141 0.859 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.688 4.705 3.681 8.967 hybrid contribution -1.156 1.842 1.614 2.708 sum -7.844 6.547 5.295 11.507 Atomic orbital electron populations 1.21793 0.91776 1.02632 1.02850 1.22443 0.97682 0.94666 0.91647 0.95448 1.22182 0.88847 0.99821 0.95954 1.61015 1.05809 1.21950 1.42848 1.19059 0.93947 0.91955 0.84617 0.98427 1.22156 0.91566 1.42686 1.10642 0.94018 1.27055 1.10432 0.92013 0.92012 1.70642 1.11714 1.40698 1.32238 0.82961 0.69958 0.76970 0.76246 1.20196 1.21090 1.20053 1.22573 0.86727 0.97883 1.00627 1.62185 1.08195 1.54120 1.03185 1.22508 1.01456 0.96761 0.91875 0.91261 0.90517 0.92232 0.92783 0.89836 0.85905 0.91108 0.92158 0.96787 0.96164 0.89025 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.88 71.98 0.64 -2.64 16 2 C 0.05 1.53 2.56 44.92 0.11 1.64 16 3 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.06 2.41 6.00 86.31 0.52 2.93 16 5 N -0.69 -33.18 5.13 -495.02 -2.54 -35.72 16 6 C 0.21 11.12 2.07 44.18 0.09 11.21 16 7 H 0.00 -0.13 8.01 -2.39 -0.02 -0.15 16 8 C -0.63 -36.24 8.69 25.60 0.22 -36.02 16 9 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 10 C -0.01 -0.66 5.39 84.65 0.46 -0.20 16 11 N -0.92 -57.13 13.51 21.45 0.29 -56.84 16 12 Si 1.12 51.10 29.90 68.60 2.05 53.15 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 16 C 0.05 2.28 4.83 86.31 0.42 2.70 16 17 N -0.55 -20.37 4.78 -896.56 -4.29 -24.66 16 18 C 0.02 0.62 9.36 127.69 1.20 1.81 16 19 H 0.07 1.47 6.19 -2.38 -0.01 1.46 16 20 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 23 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 24 H 0.32 15.47 8.79 -89.69 -0.79 14.69 16 25 H 0.28 17.62 6.40 -92.71 -0.59 17.03 16 26 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.09 2.15 5.83 -2.39 -0.01 2.13 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -64.70 238.66 -0.34 -65.03 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.49 Total: 17.60 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 3.66 Total: -18.56 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -6.54 Total: -117.22 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -64.70 -0.34 -65.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602095.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.069 kcal (2) G-P(sol) polarization free energy of solvation -64.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds