Wall clock time and date at job start Thu Apr 9 2020 13:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49163 * 2 1 4 4 C 1.53051 * 109.48596 * 239.95804 * 2 1 3 5 5 N 1.46962 * 109.36447 * 298.41101 * 4 2 1 6 6 C 1.46955 * 110.87822 * 300.68124 * 5 4 2 7 7 C 1.53051 * 109.36383 * 59.32230 * 6 5 4 8 8 H 1.09001 * 109.49222 * 61.56475 * 7 6 5 9 9 C 1.50707 * 109.48952 * 181.62671 * 7 6 5 10 10 H 1.07997 * 119.99865 * 119.99380 * 9 7 6 11 11 C 1.37874 * 119.99813 * 300.00376 * 9 7 6 12 12 N 1.31520 * 120.00460 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99844 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47006 * 60.00058 * 13 11 9 15 15 H 1.48501 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48489 * 109.47328 * 299.99729 * 13 11 9 17 17 N 1.46952 * 109.36448 * 301.59168 * 7 6 5 18 18 C 1.46903 * 110.99961 * 183.18993 * 17 7 6 19 19 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47301 * 299.99929 * 1 2 3 21 21 H 1.09003 * 109.47201 * 59.99376 * 1 2 3 22 22 H 1.08999 * 109.49170 * 58.38242 * 4 2 1 23 23 H 1.09008 * 109.48712 * 178.42601 * 4 2 1 24 24 H 1.00896 * 110.99983 * 64.54820 * 5 4 2 25 25 H 1.09002 * 109.48592 * 179.28595 * 6 5 4 26 26 H 1.08995 * 109.49404 * 299.33075 * 6 5 4 27 27 H 0.96998 * 120.00218 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.47121 * 292.24803 * 18 17 7 29 29 H 1.08995 * 109.47132 * 52.25046 * 18 17 7 30 30 H 1.09005 * 109.46879 * 172.24944 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 1.5812 -2.1181 -1.2267 6 6 2.0719 -2.8119 -0.0277 7 6 1.5613 -2.0895 1.2213 8 1 0.4717 -2.1136 1.2354 9 6 2.0957 -2.7751 2.4524 10 1 2.7133 -2.2285 3.1497 11 6 1.7963 -4.1000 2.6884 12 7 1.0439 -4.7656 1.8394 13 14 2.4592 -4.9500 4.2140 14 1 1.9640 -4.2489 5.4259 15 1 1.9965 -6.3609 4.2352 16 1 3.9436 -4.9157 4.1942 17 7 2.0207 -0.6938 1.1990 18 6 1.6139 0.0139 2.4203 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.6540 -0.2265 -2.1394 23 1 3.1302 -0.6980 -1.2633 24 1 0.5753 -2.1688 -1.2874 25 1 1.7082 -3.8394 -0.0277 26 1 3.1619 -2.8119 -0.0281 27 1 0.8330 -5.6977 2.0057 28 1 0.5297 0.1256 2.4314 29 1 1.9293 -0.5573 3.2934 30 1 2.0808 0.9987 2.4422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218602810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:26 Heat of formation + Delta-G solvation = -11.183170 kcal Electronic energy + Delta-G solvation = -12112.208373 eV Core-core repulsion = 10134.485747 eV Total energy + Delta-G solvation = -1977.722626 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.48440 -35.23838 -34.99814 -32.27584 -29.02157 -27.37346 -26.90832 -23.83368 -23.20985 -19.85020 -18.52341 -17.08960 -16.62275 -15.88366 -15.68654 -15.22904 -15.00911 -14.46462 -14.11115 -13.26304 -12.88258 -12.86130 -12.73951 -12.66934 -12.47516 -12.07620 -11.98723 -11.91913 -11.42665 -11.14602 -10.55799 -9.21222 -8.82088 -8.14026 -6.23828 1.41617 1.43334 1.50905 2.40904 3.13480 3.32697 3.66072 4.12999 4.18989 4.38315 4.50481 4.61648 4.72492 4.77112 4.84555 4.97131 4.99179 5.05871 5.20958 5.25208 5.40493 5.67100 5.72811 6.04510 6.28717 6.41504 6.62207 6.75051 6.91249 7.43775 8.91727 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053949 B = 0.014778 C = 0.012903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.880727 B = 1894.257171 C = 2169.448290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.036 3.964 3 H 0.093 0.907 4 C 0.067 3.933 5 N -0.694 5.694 6 C 0.079 3.921 7 C 0.194 3.806 8 H -0.027 1.027 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.015 3.985 12 N -0.918 5.918 13 Si 0.960 3.040 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.273 1.273 17 N -0.545 5.545 18 C 0.036 3.964 19 H 0.034 0.966 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.332 0.668 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 7.654 -2.734 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.074 4.074 3 H 0.111 0.889 4 C -0.063 4.063 5 N -0.322 5.322 6 C -0.051 4.051 7 C 0.085 3.915 8 H -0.010 1.010 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.185 4.185 12 N -0.557 5.557 13 Si 0.785 3.215 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 N -0.269 5.269 18 C -0.112 4.112 19 H 0.053 0.947 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.117 0.883 23 H 0.083 0.917 24 H 0.149 0.851 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.555 7.229 -3.206 7.927 hybrid contribution -1.265 -0.350 1.676 2.129 sum -0.710 6.878 -1.529 7.082 Atomic orbital electron populations 1.22347 0.97693 1.01028 1.02561 1.22543 0.93235 0.99120 0.92493 0.88889 1.22131 1.00384 0.87783 0.95963 1.60891 1.15980 1.14665 1.40683 1.21922 0.97629 0.98817 0.86754 1.19641 0.91697 0.84779 0.95385 1.00997 1.21383 1.31573 0.96197 1.07279 0.92554 1.25690 0.95268 0.97935 0.99563 1.69971 1.38157 1.10256 1.37321 0.85584 0.78798 0.77336 0.79747 1.19816 1.20852 1.19777 1.62353 1.59461 1.03129 1.01995 1.22239 0.97303 0.98146 0.93544 0.94685 0.92914 0.89928 0.88341 0.91668 0.85082 0.90568 0.94550 0.92786 0.96770 0.92547 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 8.22 71.98 0.59 -5.15 16 2 C 0.04 1.26 2.97 44.92 0.13 1.39 16 3 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 4 C 0.07 2.28 6.21 86.31 0.54 2.82 16 5 N -0.69 -28.10 6.83 -513.42 -3.51 -31.61 16 6 C 0.08 3.90 5.76 86.31 0.50 4.40 16 7 C 0.19 9.81 1.56 44.18 0.07 9.88 16 8 H -0.03 -1.53 6.35 -2.39 -0.02 -1.55 16 9 C -0.53 -29.10 7.83 25.60 0.20 -28.90 16 10 H 0.06 3.12 6.49 -2.91 -0.02 3.10 16 11 C 0.01 0.81 5.30 84.65 0.45 1.26 16 12 N -0.92 -52.49 11.34 21.45 0.24 -52.25 16 13 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 N -0.55 -23.46 4.73 -875.69 -4.14 -27.60 16 18 C 0.04 1.41 9.18 127.69 1.17 2.58 16 19 H 0.03 1.32 5.10 -2.39 -0.01 1.31 16 20 H 0.05 1.69 6.40 -2.39 -0.02 1.68 16 21 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 23 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 24 H 0.33 13.07 7.27 -89.70 -0.65 12.41 16 25 H 0.08 4.22 6.12 -2.39 -0.01 4.21 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.01 0.54 6.20 -2.39 -0.01 0.52 16 29 H 0.06 2.43 6.04 -2.39 -0.01 2.42 16 30 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -59.27 227.91 -1.25 -60.53 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.48 Total: 16.85 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 3.65 Total: -11.72 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -7.40 Total: -111.46 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -59.27 -1.25 -60.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.344 kcal (2) G-P(sol) polarization free energy of solvation -59.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds