Wall clock time and date at job start Thu Apr 9 2020 13:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.40075 * 111.00008 * 2 1 4 4 C 1.54508 * 111.51506 * 188.14171 * 3 2 1 5 5 C 1.50742 * 108.94255 * 283.98119 * 4 3 2 6 6 N 1.48066 * 112.93869 * 92.65031 * 5 4 3 7 7 C 1.47749 * 113.78561 * 318.29081 * 6 5 4 8 8 C 1.47697 * 110.99794 * 128.63324 * 2 1 3 9 9 H 1.09000 * 109.73699 * 271.70665 * 8 2 1 10 10 C 1.50707 * 109.73428 * 32.35461 * 8 2 1 11 11 H 1.07994 * 120.00100 * 54.38000 * 10 8 2 12 12 C 1.37881 * 119.99584 * 234.65643 * 10 8 2 13 13 N 1.31515 * 119.99392 * 174.03484 * 12 10 8 14 14 Si 1.86794 * 120.00137 * 354.03480 * 12 10 8 15 15 H 1.48502 * 109.47234 * 84.89904 * 14 12 10 16 16 H 1.48501 * 109.47070 * 204.89842 * 14 12 10 17 17 H 1.48504 * 109.47393 * 324.89875 * 14 12 10 18 18 H 1.09004 * 109.46921 * 285.49703 * 1 2 3 19 19 H 1.08995 * 109.46766 * 45.49514 * 1 2 3 20 20 H 1.08997 * 109.46814 * 165.49736 * 1 2 3 21 21 H 1.09000 * 109.07172 * 308.66729 * 3 2 1 22 22 H 1.09006 * 109.07678 * 67.61948 * 3 2 1 23 23 H 1.09004 * 109.56140 * 43.81382 * 4 3 2 24 24 H 1.09005 * 109.56543 * 164.13972 * 4 3 2 25 25 H 1.09001 * 108.79453 * 213.54829 * 5 4 3 26 26 H 1.09006 * 108.78811 * 331.76313 * 5 4 3 27 27 H 1.00897 * 110.99935 * 84.35346 * 6 5 4 28 28 H 1.08997 * 108.98959 * 198.24141 * 7 6 5 29 29 H 1.08999 * 108.99205 * 79.49920 * 7 6 5 30 30 H 0.96999 * 119.99180 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9711 1.3077 0.0000 4 6 3.5026 1.3268 -0.2036 5 6 4.1724 0.9186 1.0837 6 7 4.4492 -0.5342 1.1548 7 6 3.3476 -1.3763 0.6445 8 6 1.9983 -0.8609 1.0771 9 1 2.1017 -0.2812 1.9944 10 6 1.0619 -2.0186 1.3097 11 1 0.7775 -2.6569 0.4863 12 6 0.5639 -2.2594 2.5727 13 7 -0.3426 -3.1947 2.7547 14 14 1.1768 -1.2573 4.0251 15 1 0.4047 0.0081 4.1144 16 1 0.9958 -2.0369 5.2760 17 1 2.6170 -0.9463 3.8395 18 1 -0.3633 0.2746 0.9904 19 1 -0.3633 0.7203 -0.7329 20 1 -0.3633 -0.9949 -0.2574 21 1 1.4978 1.8709 -0.8043 22 1 1.7326 1.7809 0.9526 23 1 3.7744 0.6272 -0.9941 24 1 3.8218 2.3322 -0.4782 25 1 5.1137 1.4603 1.1768 26 1 3.5273 1.1943 1.9179 27 1 5.3190 -0.7595 0.6958 28 1 3.4756 -2.3923 1.0178 29 1 3.3886 -1.3924 -0.4446 30 1 -0.6926 -3.3643 3.6433 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218603381.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:34 Heat of formation + Delta-G solvation = -10.095117 kcal Electronic energy + Delta-G solvation = -12136.697707 eV Core-core repulsion = 10159.022262 eV Total energy + Delta-G solvation = -1977.675445 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36144 -36.02254 -34.97814 -33.00124 -29.69274 -27.98206 -25.25174 -25.05014 -21.61845 -20.62447 -19.24134 -17.23918 -16.76622 -16.28665 -15.81627 -15.70439 -14.84790 -14.56731 -13.85997 -13.67799 -13.46864 -13.03482 -12.88149 -12.76056 -12.38163 -11.93860 -11.82813 -11.70164 -11.30414 -11.19753 -10.78183 -9.18449 -8.90314 -8.34875 -6.37431 1.24841 1.31593 1.45640 2.28899 2.92606 3.34095 3.48497 3.96931 4.09584 4.31278 4.49986 4.60004 4.65670 4.75962 4.78711 4.91729 4.93874 4.96168 5.05546 5.31451 5.34296 5.43286 5.60940 6.10236 6.18813 6.38053 6.67260 6.72160 6.96465 7.29448 8.81005 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.041699 B = 0.018420 C = 0.015852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.320493 B = 1519.738810 C = 1765.882085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.569 5.569 3 C 0.067 3.933 4 C -0.138 4.138 5 C 0.057 3.943 6 N -0.712 5.712 7 C 0.085 3.915 8 C 0.191 3.809 9 H 0.012 0.988 10 C -0.503 4.503 11 H 0.041 0.959 12 C 0.028 3.972 13 N -0.936 5.936 14 Si 0.928 3.072 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.249 1.249 18 H -0.003 1.003 19 H 0.070 0.930 20 H 0.049 0.951 21 H 0.080 0.920 22 H -0.002 1.002 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.349 0.651 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 10.071 -3.865 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.295 5.295 3 C -0.063 4.063 4 C -0.178 4.178 5 C -0.072 4.072 6 N -0.344 5.344 7 C -0.044 4.044 8 C 0.085 3.915 9 H 0.030 0.970 10 C -0.542 4.542 11 H 0.060 0.940 12 C -0.172 4.172 13 N -0.576 5.576 14 Si 0.753 3.247 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.172 1.172 18 H 0.015 0.985 19 H 0.089 0.911 20 H 0.068 0.932 21 H 0.098 0.902 22 H 0.016 0.984 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.167 0.833 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.644 9.755 -3.507 12.880 hybrid contribution -0.464 0.376 0.653 0.885 sum 7.180 10.131 -2.855 12.742 Atomic orbital electron populations 1.21846 0.87332 1.01098 0.97833 1.59358 1.07864 1.12913 1.49315 1.21174 0.96690 0.89514 0.98917 1.22067 0.94040 1.03044 0.98627 1.21818 1.00957 0.87991 0.96389 1.60414 1.05810 1.04776 1.63377 1.21731 0.90091 0.95797 0.96766 1.19327 0.92432 0.91322 0.88438 0.97044 1.20934 1.26640 1.11944 0.94663 0.94049 1.25716 0.94173 0.96115 1.01155 1.70015 1.29445 1.34537 1.23583 0.86014 0.80620 0.78722 0.79346 1.20344 1.20938 1.17250 0.98481 0.91098 0.93193 0.90220 0.98434 0.91578 0.88178 0.88818 0.94406 0.83297 0.92657 0.94952 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.84 8.65 127.69 1.10 3.95 16 2 N -0.57 -24.06 4.20 -917.49 -3.85 -27.91 16 3 C 0.07 2.27 4.95 88.05 0.44 2.71 16 4 C -0.14 -3.88 5.68 30.37 0.17 -3.71 16 5 C 0.06 1.75 6.00 85.35 0.51 2.26 16 6 N -0.71 -24.82 6.94 -516.85 -3.58 -28.40 16 7 C 0.09 3.61 5.66 85.42 0.48 4.09 16 8 C 0.19 9.10 1.76 43.30 0.08 9.17 16 9 H 0.01 0.59 3.51 -2.39 -0.01 0.59 16 10 C -0.50 -28.48 6.58 25.60 0.17 -28.31 16 11 H 0.04 2.61 7.79 -2.91 -0.02 2.59 16 12 C 0.03 1.61 5.47 84.66 0.46 2.07 16 13 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 14 Si 0.93 45.75 26.92 68.60 1.85 47.59 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 16 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 17 H -0.25 -12.01 6.83 99.48 0.68 -11.33 16 18 H 0.00 -0.16 8.11 -2.38 -0.02 -0.18 16 19 H 0.07 2.45 7.76 -2.39 -0.02 2.43 16 20 H 0.05 2.39 6.87 -2.39 -0.02 2.37 16 21 H 0.08 2.34 7.78 -2.39 -0.02 2.32 16 22 H 0.00 -0.08 7.60 -2.38 -0.02 -0.10 16 23 H 0.07 1.94 7.19 -2.38 -0.02 1.93 16 24 H 0.10 2.09 8.14 -2.38 -0.02 2.08 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.04 1.34 6.53 -2.38 -0.02 1.32 16 27 H 0.35 9.85 8.91 -89.70 -0.80 9.05 16 28 H 0.06 2.54 7.71 -2.39 -0.02 2.52 16 29 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -64.27 229.36 -1.58 -65.85 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.29 Total: 8.17 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.42 Total: -7.76 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -7.14 Total: -113.85 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.85 Total: 47.59 kcal Total: -64.27 -1.58 -65.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218603381.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.756 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds