Wall clock time and date at job start Thu Apr 9 2020 13:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99783 * 2 1 4 4 C 1.53003 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46960 * 305.54512 * 4 3 2 6 6 C 1.50700 * 109.47055 * 65.53505 * 4 3 2 7 7 H 1.08007 * 119.99802 * 84.81598 * 6 4 3 8 8 C 1.37875 * 120.00790 * 264.81502 * 6 4 3 9 9 N 1.31514 * 119.99284 * 6.69646 * 8 6 4 10 10 Si 1.86794 * 120.00242 * 186.69915 * 8 6 4 11 11 H 1.48503 * 109.46937 * 269.99466 * 10 8 6 12 12 H 1.48496 * 109.47354 * 29.99752 * 10 8 6 13 13 H 1.48502 * 109.47057 * 150.00180 * 10 8 6 14 14 C 1.52996 * 109.47640 * 185.54328 * 4 3 2 15 15 C 1.53780 * 113.61834 * 159.13746 * 14 4 3 16 16 C 1.53952 * 87.01785 * 220.04825 * 15 14 4 17 17 C 1.53776 * 113.61368 * 61.52536 * 14 4 3 18 18 H 1.09005 * 109.47520 * 59.99770 * 1 2 3 19 19 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47712 * 299.99741 * 1 2 3 21 21 H 1.09003 * 109.47134 * 60.00151 * 3 2 1 22 22 H 1.09002 * 109.47344 * 300.00012 * 3 2 1 23 23 H 0.96996 * 120.00674 * 359.81893 * 9 8 6 24 24 H 1.09009 * 112.84363 * 290.33282 * 14 4 3 25 25 H 1.09001 * 113.60877 * 334.56416 * 15 14 4 26 26 H 1.08992 * 113.61271 * 105.46723 * 15 14 4 27 27 H 1.09003 * 113.53359 * 270.80924 * 16 15 14 28 28 H 1.08998 * 113.74690 * 139.94518 * 16 15 14 29 29 H 1.09003 * 113.61353 * 254.53039 * 17 14 4 30 30 H 1.08993 * 113.61852 * 25.43906 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5603 0.8353 6 6 3.9892 0.5588 -1.2942 7 1 4.1382 1.1745 -2.1690 8 6 4.2143 -0.7999 -1.3611 9 7 3.9082 -1.5681 -0.3385 10 14 4.9539 -1.5492 -2.9040 11 1 3.8654 -1.9348 -3.8377 12 1 5.8407 -0.5556 -3.5608 13 1 5.7434 -2.7532 -2.5401 14 6 4.1573 2.5757 0.1387 15 6 5.6070 2.5539 0.6512 16 6 5.2398 3.7836 1.5015 17 6 3.7849 3.2884 1.4495 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6885 1.8463 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.5266 -1.1786 0.4637 24 1 4.0171 3.1927 -0.7489 25 1 5.8477 1.6704 1.2425 26 1 6.3465 2.7615 -0.1220 27 1 5.3971 4.7315 0.9867 28 1 5.6704 3.7694 2.5028 29 1 3.0558 4.0882 1.3197 30 1 3.5267 2.6062 2.2593 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260772590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:36 Heat of formation + Delta-G solvation = -42.341778 kcal Electronic energy + Delta-G solvation = -11705.779133 eV Core-core repulsion = 9694.412617 eV Total energy + Delta-G solvation = -2011.366516 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.40280 -36.54797 -33.13413 -29.82085 -26.13774 -25.12363 -23.86128 -23.55480 -20.42737 -18.62485 -16.65492 -15.43352 -14.79202 -14.72922 -13.98290 -13.72918 -13.47353 -12.73952 -11.81953 -11.73739 -11.63177 -11.30528 -10.81650 -10.66528 -10.43165 -10.04673 -10.00021 -9.70308 -9.34824 -9.19003 -8.67825 -8.21909 -8.05599 -6.12204 -3.80362 3.53342 3.57070 3.71972 4.68960 4.85879 5.30972 5.37511 5.46207 5.57542 5.80247 5.90450 5.97598 6.11106 6.22552 6.29524 6.34574 6.36740 6.42133 6.52096 6.67605 6.86157 6.98941 7.14289 7.17309 7.65153 8.27253 8.43917 8.70674 9.13701 9.93900 11.30358 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.017568 C = 0.011925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.436901 B = 1593.463427 C = 2347.540694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.074 3.926 4 C 0.038 3.962 5 H 0.043 0.957 6 C -0.594 4.594 7 H 0.042 0.958 8 C 0.029 3.971 9 N -0.900 5.900 10 Si 1.064 2.936 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.286 1.286 14 C -0.084 4.084 15 C -0.119 4.119 16 C -0.147 4.147 17 C -0.146 4.146 18 H 0.027 0.973 19 H 0.073 0.927 20 H 0.023 0.977 21 H 0.010 0.990 22 H 0.026 0.974 23 H 0.278 0.722 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 6.928 2.030 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.004 4.004 4 C 0.019 3.981 5 H 0.061 0.939 6 C -0.632 4.632 7 H 0.061 0.939 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.894 3.106 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.212 1.212 14 C -0.102 4.102 15 C -0.157 4.157 16 C -0.184 4.184 17 C -0.184 4.184 18 H 0.046 0.954 19 H 0.091 0.909 20 H 0.042 0.958 21 H 0.028 0.972 22 H 0.044 0.956 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.052 5.315 1.362 5.586 hybrid contribution -0.897 1.762 0.571 2.058 sum -1.949 7.077 1.933 7.590 Atomic orbital electron populations 1.22584 0.84508 1.01244 0.98179 1.88165 1.16293 1.28246 1.94784 1.22925 0.98268 0.83300 0.95858 1.18891 0.88279 0.91704 0.99178 0.93937 1.21667 1.50617 0.95025 0.95890 0.93920 1.25585 0.95322 0.94024 1.02846 1.70633 1.38762 1.38325 1.05810 0.83643 0.76318 0.75549 0.75134 1.21845 1.21772 1.21220 1.22395 0.95450 0.97635 0.94753 1.22757 0.97561 0.96815 0.98550 1.22890 0.97548 0.98331 0.99651 1.23027 0.95704 0.99631 0.99991 0.95433 0.90856 0.95835 0.97230 0.95568 0.90986 0.90911 0.90562 0.92332 0.91150 0.92542 0.92880 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 101.05 1.11 1.73 16 2 O -0.36 -8.93 9.20 -35.23 -0.32 -9.26 16 3 C 0.07 1.73 5.21 37.16 0.19 1.92 16 4 C 0.04 0.96 1.64 -91.77 -0.15 0.81 16 5 H 0.04 1.17 6.36 -51.93 -0.33 0.84 16 6 C -0.59 -16.87 8.07 -34.44 -0.28 -17.14 16 7 H 0.04 1.22 7.82 -52.48 -0.41 0.81 16 8 C 0.03 0.85 5.40 -17.82 -0.10 0.75 16 9 N -0.90 -27.85 13.32 55.43 0.74 -27.11 16 10 Si 1.06 26.10 29.91 -169.99 -5.08 21.01 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C -0.08 -1.75 3.09 -89.81 -0.28 -2.03 16 15 C -0.12 -2.31 7.62 -25.83 -0.20 -2.50 16 16 C -0.15 -2.35 8.09 -25.83 -0.21 -2.56 16 17 C -0.15 -2.57 6.65 -25.92 -0.17 -2.74 16 18 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.01 0.20 7.32 -51.93 -0.38 -0.18 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.28 8.66 5.71 -40.82 -0.23 8.42 16 24 H 0.07 1.53 8.14 -51.92 -0.42 1.11 16 25 H 0.08 1.56 7.99 -51.93 -0.41 1.15 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 247.09 15.07 3.72 3.72 Total: -1.00 -30.91 247.09 -5.81 -36.72 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.79 Total: -3.32 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.07 Total: -21.76 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.74 Total: -27.11 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.32 Total: -9.26 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.91 -5.81 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.625 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds