Wall clock time and date at job start Thu Apr 9 2020 13:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99783 * 2 1 4 4 C 1.53003 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46960 * 305.54512 * 4 3 2 6 6 C 1.50700 * 109.47055 * 65.53505 * 4 3 2 7 7 H 1.08007 * 119.99802 * 84.81598 * 6 4 3 8 8 C 1.37875 * 120.00790 * 264.81502 * 6 4 3 9 9 N 1.31514 * 119.99284 * 6.69646 * 8 6 4 10 10 Si 1.86794 * 120.00242 * 186.69915 * 8 6 4 11 11 H 1.48503 * 109.46937 * 269.99466 * 10 8 6 12 12 H 1.48496 * 109.47354 * 29.99752 * 10 8 6 13 13 H 1.48502 * 109.47057 * 150.00180 * 10 8 6 14 14 C 1.52996 * 109.47640 * 185.54328 * 4 3 2 15 15 C 1.53780 * 113.61834 * 159.13746 * 14 4 3 16 16 C 1.53952 * 87.01785 * 220.04825 * 15 14 4 17 17 C 1.53776 * 113.61368 * 61.52536 * 14 4 3 18 18 H 1.09005 * 109.47520 * 59.99770 * 1 2 3 19 19 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47712 * 299.99741 * 1 2 3 21 21 H 1.09003 * 109.47134 * 60.00151 * 3 2 1 22 22 H 1.09002 * 109.47344 * 300.00012 * 3 2 1 23 23 H 0.96996 * 120.00674 * 359.81893 * 9 8 6 24 24 H 1.09009 * 112.84363 * 290.33282 * 14 4 3 25 25 H 1.09001 * 113.60877 * 334.56416 * 15 14 4 26 26 H 1.08992 * 113.61271 * 105.46723 * 15 14 4 27 27 H 1.09003 * 113.53359 * 270.80924 * 16 15 14 28 28 H 1.08998 * 113.74690 * 139.94518 * 16 15 14 29 29 H 1.09003 * 113.61353 * 254.53039 * 17 14 4 30 30 H 1.08993 * 113.61852 * 25.43906 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5603 0.8353 6 6 3.9892 0.5588 -1.2942 7 1 4.1382 1.1745 -2.1690 8 6 4.2143 -0.7999 -1.3611 9 7 3.9082 -1.5681 -0.3385 10 14 4.9539 -1.5492 -2.9040 11 1 3.8654 -1.9348 -3.8377 12 1 5.8407 -0.5556 -3.5608 13 1 5.7434 -2.7532 -2.5401 14 6 4.1573 2.5757 0.1387 15 6 5.6070 2.5539 0.6512 16 6 5.2398 3.7836 1.5015 17 6 3.7849 3.2884 1.4495 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6885 1.8463 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.5266 -1.1786 0.4637 24 1 4.0171 3.1927 -0.7489 25 1 5.8477 1.6704 1.2425 26 1 6.3465 2.7615 -0.1220 27 1 5.3971 4.7315 0.9867 28 1 5.6704 3.7694 2.5028 29 1 3.0558 4.0882 1.3197 30 1 3.5267 2.6062 2.2593 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260772590.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:36 Heat of formation + Delta-G solvation = -61.339691 kcal Electronic energy + Delta-G solvation = -11706.602944 eV Core-core repulsion = 9694.412617 eV Total energy + Delta-G solvation = -2012.190327 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.01662 -38.28726 -35.20132 -31.76164 -27.76939 -26.71540 -25.82024 -25.20048 -22.28006 -20.19314 -18.73267 -17.19809 -16.53783 -16.28566 -15.64910 -15.64471 -15.22372 -14.55014 -13.54407 -13.35184 -13.26530 -12.93338 -12.60540 -12.46185 -12.16604 -11.93666 -11.61460 -11.26261 -11.10370 -10.95284 -10.47359 -10.31493 -10.11712 -8.41836 -6.09010 1.53745 1.63127 1.79354 2.65756 3.18713 3.38756 3.91144 3.93405 4.02173 4.18676 4.40599 4.44948 4.57351 4.58194 4.76764 4.81735 4.88459 4.93855 5.01478 5.11713 5.17047 5.31242 5.36791 5.53953 5.80292 6.24121 6.34083 6.69638 6.86745 7.72122 9.00519 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.017568 C = 0.011925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.436901 B = 1593.463427 C = 2347.540694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.080 3.920 4 C 0.033 3.967 5 H 0.009 0.991 6 C -0.600 4.600 7 H 0.034 0.966 8 C -0.023 4.023 9 N -0.928 5.928 10 Si 1.107 2.893 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.285 1.285 14 C -0.095 4.095 15 C -0.129 4.129 16 C -0.123 4.123 17 C -0.137 4.137 18 H 0.039 0.961 19 H 0.083 0.917 20 H 0.049 0.951 21 H 0.035 0.965 22 H 0.024 0.976 23 H 0.264 0.736 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 8.450 1.937 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.003 3.997 4 C 0.014 3.986 5 H 0.027 0.973 6 C -0.638 4.638 7 H 0.053 0.947 8 C -0.224 4.224 9 N -0.565 5.565 10 Si 0.931 3.069 11 H -0.208 1.208 12 H -0.198 1.198 13 H -0.211 1.211 14 C -0.114 4.114 15 C -0.167 4.167 16 C -0.161 4.161 17 C -0.174 4.174 18 H 0.057 0.943 19 H 0.101 0.899 20 H 0.067 0.933 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.245 6.862 1.272 7.089 hybrid contribution -0.894 1.311 0.605 1.698 sum -2.138 8.173 1.876 8.654 Atomic orbital electron populations 1.22811 0.81712 1.02584 0.99943 1.88111 1.19574 1.29160 1.95119 1.22764 0.96882 0.83229 0.96822 1.18916 0.89924 0.93423 0.96290 0.97309 1.22016 1.49733 0.95122 0.96946 0.94724 1.26906 0.95498 0.95169 1.04799 1.70748 1.40900 1.38595 1.06230 0.83080 0.76206 0.75307 0.72336 1.20839 1.19831 1.21122 1.22408 0.96642 0.95611 0.96754 1.22773 0.96650 0.98071 0.99177 1.22804 0.95659 0.97405 1.00197 1.22943 0.97615 0.99584 0.97269 0.94253 0.89884 0.93294 0.94734 0.95733 0.92453 0.90926 0.92756 0.92296 0.88776 0.90578 0.90599 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.40 -20.08 9.20 -148.98 -1.37 -21.45 16 3 C 0.08 3.71 5.21 71.98 0.37 4.09 16 4 C 0.03 1.70 1.64 -11.54 -0.02 1.68 16 5 H 0.01 0.50 6.36 -2.38 -0.02 0.48 16 6 C -0.60 -34.52 8.07 25.60 0.21 -34.31 16 7 H 0.03 1.99 7.82 -2.91 -0.02 1.97 16 8 C -0.02 -1.38 5.40 84.65 0.46 -0.93 16 9 N -0.93 -58.85 13.32 21.45 0.29 -58.56 16 10 Si 1.11 52.78 29.91 68.60 2.05 54.83 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 14 C -0.10 -3.92 3.09 -10.27 -0.03 -3.95 16 15 C -0.13 -4.89 7.62 31.18 0.24 -4.65 16 16 C -0.12 -3.56 8.09 31.18 0.25 -3.31 16 17 C -0.14 -4.46 6.65 31.12 0.21 -4.25 16 18 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 19 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 20 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.03 1.42 7.32 -2.39 -0.02 1.40 16 22 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.26 17.10 5.71 -92.71 -0.53 16.57 16 24 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 25 H 0.05 2.26 7.99 -2.39 -0.02 2.24 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -67.08 247.09 5.22 -61.86 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.32 Total: 6.76 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.93 Total: -43.42 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.29 Total: -58.56 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.37 Total: -21.45 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.05 Total: 54.83 kcal Total: -67.08 5.22 -61.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772590.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.516 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds