Wall clock time and date at job start Thu Apr 9 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47214 * 2 1 4 4 C 1.42895 * 113.99961 * 182.45963 * 3 2 1 5 5 C 1.50700 * 110.01951 * 305.40860 * 4 3 2 6 6 H 1.07999 * 120.00006 * 119.94469 * 5 4 3 7 7 C 1.37874 * 119.99563 * 299.94827 * 5 4 3 8 8 N 1.31518 * 119.99988 * 172.53391 * 7 5 4 9 9 Si 1.86796 * 120.00475 * 352.81028 * 7 5 4 10 10 H 1.48496 * 109.47377 * 274.58451 * 9 7 5 11 11 H 1.48505 * 109.47066 * 34.58127 * 9 7 5 12 12 H 1.48497 * 109.47530 * 154.58183 * 9 7 5 13 13 C 1.54268 * 110.03417 * 66.80082 * 4 3 2 14 14 C 1.54964 * 104.16099 * 95.74938 * 13 4 3 15 15 C 1.54890 * 102.77586 * 37.89321 * 14 13 4 16 16 C 1.53873 * 110.02933 * 184.01606 * 4 3 2 17 17 H 1.09005 * 109.47244 * 180.02562 * 1 2 3 18 18 H 1.09000 * 109.47006 * 300.00189 * 1 2 3 19 19 H 1.08997 * 109.47068 * 60.00834 * 1 2 3 20 20 H 1.08997 * 109.47283 * 239.99368 * 2 1 3 21 21 H 1.09007 * 109.46888 * 119.99673 * 2 1 3 22 22 H 0.96995 * 120.00539 * 180.02562 * 8 7 5 23 23 H 1.08996 * 110.48593 * 214.40199 * 13 4 3 24 24 H 1.09006 * 110.48545 * 337.04186 * 13 4 3 25 25 H 1.08996 * 110.72485 * 279.57265 * 14 13 4 26 26 H 1.09002 * 110.76476 * 156.22525 * 14 13 4 27 27 H 1.08998 * 110.48503 * 203.40437 * 15 14 13 28 28 H 1.08996 * 110.49226 * 80.76178 * 15 14 13 29 29 H 1.08998 * 110.03490 * 359.95258 * 16 4 3 30 30 H 1.09003 * 110.03042 * 121.38435 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4297 1.4605 -0.0560 5 6 4.0548 0.6671 1.0624 6 1 4.7361 -0.1400 0.8368 7 6 3.7568 0.9716 2.3737 8 7 4.1828 0.1915 3.3431 9 14 2.7414 2.4877 2.7731 10 1 3.6330 3.6721 2.8591 11 1 1.7332 2.7039 1.7044 12 1 2.0507 2.2927 4.0731 13 6 3.9471 0.9523 -1.4176 14 6 4.0836 2.2363 -2.2745 15 6 4.6020 3.2773 -1.2514 16 6 3.8455 2.9382 0.0496 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5137 -0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 3.9729 0.4054 4.2655 23 1 4.9161 0.4671 -1.3005 24 1 3.2283 0.2673 -1.8673 25 1 3.1158 2.5372 -2.6752 26 1 4.8067 2.0902 -3.0770 27 1 4.3610 4.2881 -1.5804 28 1 5.6769 3.1681 -1.1072 29 1 2.9615 3.5690 0.1428 30 1 4.4993 3.0815 0.9099 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260863056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:47 Heat of formation + Delta-G solvation = -57.150446 kcal Electronic energy + Delta-G solvation = -12125.802900 eV Core-core repulsion = 10113.794232 eV Total energy + Delta-G solvation = -2012.008668 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.32792 -34.86518 -32.35480 -30.28090 -28.03266 -27.65391 -23.72991 -21.93380 -19.96010 -18.88914 -16.82931 -15.26274 -15.16323 -14.31288 -14.07542 -13.41261 -12.65667 -12.60078 -12.24454 -11.96865 -11.53459 -11.08135 -10.82731 -10.70059 -10.30181 -10.16375 -10.03270 -9.83059 -9.76051 -9.68997 -8.81934 -8.56311 -7.85338 -6.10510 -4.16547 3.38459 3.48313 3.69379 4.53355 4.91276 5.23234 5.54078 5.58786 5.65821 5.86997 6.04798 6.24377 6.25391 6.32471 6.41965 6.48057 6.50947 6.61231 6.64441 6.76176 6.88456 7.01435 7.04871 7.06379 7.41318 7.72084 8.26556 8.81845 8.92511 9.55528 11.00257 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.030920 B = 0.022902 C = 0.017355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.345701 B = 1222.309898 C = 1613.014891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 O -0.396 6.396 4 C 0.203 3.797 5 C -0.541 4.541 6 H 0.073 0.927 7 C 0.085 3.915 8 N -0.893 5.893 9 Si 0.867 3.133 10 H -0.284 1.284 11 H -0.227 1.227 12 H -0.301 1.301 13 C -0.134 4.134 14 C -0.122 4.122 15 C -0.117 4.117 16 C -0.120 4.120 17 H 0.057 0.943 18 H 0.053 0.947 19 H 0.049 0.951 20 H 0.031 0.969 21 H 0.061 0.939 22 H 0.264 0.736 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 3.099 -7.440 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 O -0.316 6.316 4 C 0.165 3.835 5 C -0.579 4.579 6 H 0.091 0.909 7 C -0.119 4.119 8 N -0.530 5.530 9 Si 0.695 3.305 10 H -0.211 1.211 11 H -0.150 1.150 12 H -0.229 1.229 13 C -0.172 4.172 14 C -0.160 4.160 15 C -0.155 4.155 16 C -0.158 4.158 17 H 0.076 0.924 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.049 0.951 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.417 3.222 -7.254 8.642 hybrid contribution -0.219 0.474 0.465 0.699 sum -3.636 3.696 -6.789 8.542 Atomic orbital electron populations 1.21762 0.96365 1.00709 1.01675 1.22042 0.92246 0.86328 1.00433 1.87855 1.24008 1.25147 1.94610 1.19978 0.78662 0.92205 0.92607 1.21366 1.28668 1.18081 0.89747 0.90860 1.24969 0.94328 0.96407 0.96165 1.69959 1.45768 1.37244 0.99993 0.87157 0.82254 0.83172 0.77949 1.21082 1.14960 1.22853 1.22853 1.00972 0.96372 0.96986 1.22464 0.99778 0.96632 0.97080 1.22277 0.99768 0.97663 0.95768 1.22454 0.99036 0.96879 0.97397 0.92405 0.92768 0.93169 0.95118 0.92075 0.92654 0.91535 0.92631 0.92271 0.92932 0.92909 0.91996 0.92679 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 37.16 0.38 -2.22 16 2 C 0.07 1.43 6.02 37.16 0.22 1.65 16 3 O -0.40 -9.48 7.33 -35.23 -0.26 -9.74 16 4 C 0.20 4.86 0.53 -90.65 -0.05 4.81 16 5 C -0.54 -15.07 7.04 -34.44 -0.24 -15.31 16 6 H 0.07 2.21 7.80 -52.49 -0.41 1.80 16 7 C 0.09 2.46 5.28 -17.82 -0.09 2.36 16 8 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.87 22.26 23.84 -169.99 -4.05 18.20 16 10 H -0.28 -7.12 7.01 56.52 0.40 -6.73 16 11 H -0.23 -5.72 5.27 56.52 0.30 -5.42 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 13 C -0.13 -2.77 5.88 -25.03 -0.15 -2.92 16 14 C -0.12 -2.15 6.91 -24.70 -0.17 -2.32 16 15 C -0.12 -2.14 6.83 -25.07 -0.17 -2.31 16 16 C -0.12 -2.68 4.20 -25.61 -0.11 -2.78 16 17 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 18 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.03 0.62 6.35 -51.93 -0.33 0.29 16 21 H 0.06 1.49 7.05 -51.93 -0.37 1.12 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 24 H 0.06 1.10 6.23 -51.93 -0.32 0.78 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.22 6.94 -51.93 -0.36 0.86 16 30 H 0.07 1.74 5.96 -51.93 -0.31 1.43 16 LS Contribution 230.79 15.07 3.48 3.48 Total: -1.00 -29.96 230.79 -5.13 -35.10 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.70 Total: -1.55 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.38 Total: -19.04 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.77 Total: -26.46 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.26 Total: -9.74 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.05 Total: 18.20 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.96 -5.13 -35.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260863056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.052 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds