Wall clock time and date at job start Thu Apr 9 2020 13:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47214 * 2 1 4 4 C 1.42895 * 113.99961 * 182.45963 * 3 2 1 5 5 C 1.50700 * 110.01951 * 305.40860 * 4 3 2 6 6 H 1.07999 * 120.00006 * 119.94469 * 5 4 3 7 7 C 1.37874 * 119.99563 * 299.94827 * 5 4 3 8 8 N 1.31518 * 119.99988 * 172.53391 * 7 5 4 9 9 Si 1.86796 * 120.00475 * 352.81028 * 7 5 4 10 10 H 1.48496 * 109.47377 * 274.58451 * 9 7 5 11 11 H 1.48505 * 109.47066 * 34.58127 * 9 7 5 12 12 H 1.48497 * 109.47530 * 154.58183 * 9 7 5 13 13 C 1.54268 * 110.03417 * 66.80082 * 4 3 2 14 14 C 1.54964 * 104.16099 * 95.74938 * 13 4 3 15 15 C 1.54890 * 102.77586 * 37.89321 * 14 13 4 16 16 C 1.53873 * 110.02933 * 184.01606 * 4 3 2 17 17 H 1.09005 * 109.47244 * 180.02562 * 1 2 3 18 18 H 1.09000 * 109.47006 * 300.00189 * 1 2 3 19 19 H 1.08997 * 109.47068 * 60.00834 * 1 2 3 20 20 H 1.08997 * 109.47283 * 239.99368 * 2 1 3 21 21 H 1.09007 * 109.46888 * 119.99673 * 2 1 3 22 22 H 0.96995 * 120.00539 * 180.02562 * 8 7 5 23 23 H 1.08996 * 110.48593 * 214.40199 * 13 4 3 24 24 H 1.09006 * 110.48545 * 337.04186 * 13 4 3 25 25 H 1.08996 * 110.72485 * 279.57265 * 14 13 4 26 26 H 1.09002 * 110.76476 * 156.22525 * 14 13 4 27 27 H 1.08998 * 110.48503 * 203.40437 * 15 14 13 28 28 H 1.08996 * 110.49226 * 80.76178 * 15 14 13 29 29 H 1.08998 * 110.03490 * 359.95258 * 16 4 3 30 30 H 1.09003 * 110.03042 * 121.38435 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4297 1.4605 -0.0560 5 6 4.0548 0.6671 1.0624 6 1 4.7361 -0.1400 0.8368 7 6 3.7568 0.9716 2.3737 8 7 4.1828 0.1915 3.3431 9 14 2.7414 2.4877 2.7731 10 1 3.6330 3.6721 2.8591 11 1 1.7332 2.7039 1.7044 12 1 2.0507 2.2927 4.0731 13 6 3.9471 0.9523 -1.4176 14 6 4.0836 2.2363 -2.2745 15 6 4.6020 3.2773 -1.2514 16 6 3.8455 2.9382 0.0496 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5137 -0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 1.8933 -0.5138 0.8901 22 1 3.9729 0.4054 4.2655 23 1 4.9161 0.4671 -1.3005 24 1 3.2283 0.2673 -1.8673 25 1 3.1158 2.5372 -2.6752 26 1 4.8067 2.0902 -3.0770 27 1 4.3610 4.2881 -1.5804 28 1 5.6769 3.1681 -1.1072 29 1 2.9615 3.5690 0.1428 30 1 4.4993 3.0815 0.9099 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260863056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:58:46 Heat of formation + Delta-G solvation = -76.904044 kcal Electronic energy + Delta-G solvation = -12126.659480 eV Core-core repulsion = 10113.794232 eV Total energy + Delta-G solvation = -2012.865248 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.09942 -36.52597 -34.54104 -31.88837 -29.72268 -29.47010 -25.67919 -23.55134 -21.53312 -20.71973 -18.86807 -17.18585 -16.92032 -16.11920 -15.65341 -15.28517 -14.73112 -14.24059 -13.87145 -13.53241 -13.21494 -12.95911 -12.54028 -12.30794 -12.12806 -11.90206 -11.74871 -11.52833 -11.50644 -11.29802 -10.88640 -10.66585 -9.75454 -8.35664 -6.43625 1.32504 1.38380 1.61861 2.38833 2.96605 3.30181 3.97132 4.00834 4.21007 4.33224 4.55968 4.66382 4.76392 4.78348 4.86501 4.95023 4.97821 5.01943 5.17407 5.23825 5.24924 5.34113 5.35939 5.56883 5.62275 5.69918 6.08145 6.64292 6.92157 7.32247 8.79030 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.030920 B = 0.022902 C = 0.017355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.345701 B = 1222.309898 C = 1613.014891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 O -0.403 6.403 4 C 0.194 3.806 5 C -0.537 4.537 6 H 0.033 0.967 7 C 0.035 3.965 8 N -0.939 5.939 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.216 1.216 12 H -0.306 1.306 13 C -0.135 4.135 14 C -0.111 4.111 15 C -0.112 4.112 16 C -0.126 4.126 17 H 0.084 0.916 18 H 0.046 0.954 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.022 0.978 22 H 0.265 0.735 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 4.656 -9.419 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 O -0.323 6.323 4 C 0.156 3.844 5 C -0.574 4.574 6 H 0.051 0.949 7 C -0.164 4.164 8 N -0.579 5.579 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.138 1.138 12 H -0.234 1.234 13 C -0.173 4.173 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.163 4.163 17 H 0.103 0.897 18 H 0.065 0.935 19 H 0.088 0.912 20 H 0.060 0.940 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.495 4.784 -9.256 11.348 hybrid contribution 0.155 -0.128 1.062 1.080 sum -4.339 4.657 -8.195 10.376 Atomic orbital electron populations 1.21736 0.92925 1.02772 1.02247 1.22179 0.95050 0.85172 0.99095 1.87820 1.23583 1.26321 1.94626 1.20089 0.78606 0.93032 0.92684 1.21629 1.27437 1.17051 0.91314 0.94904 1.25704 0.95592 0.98942 0.96163 1.70082 1.48119 1.39296 1.00422 0.86284 0.81126 0.80253 0.77491 1.19922 1.13837 1.23435 1.22794 1.00190 0.98305 0.96016 1.22433 1.01347 0.93983 0.97026 1.22292 0.99483 0.99622 0.93569 1.22434 0.99307 0.95531 0.99051 0.89712 0.93463 0.91234 0.93970 0.96008 0.92664 0.92865 0.92038 0.91047 0.89959 0.89747 0.91594 0.92280 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 10.28 71.98 0.74 -3.83 16 2 C 0.06 2.61 6.02 71.98 0.43 3.04 16 3 O -0.40 -18.69 7.33 -148.98 -1.09 -19.78 16 4 C 0.19 9.11 0.53 -10.82 -0.01 9.10 16 5 C -0.54 -30.69 7.04 25.60 0.18 -30.51 16 6 H 0.03 2.08 7.80 -2.91 -0.02 2.06 16 7 C 0.04 2.08 5.28 84.65 0.45 2.52 16 8 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 9 Si 0.92 46.37 23.84 68.60 1.64 48.01 16 10 H -0.27 -13.13 7.01 99.48 0.70 -12.43 16 11 H -0.22 -10.40 5.27 99.48 0.52 -9.88 16 12 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 13 C -0.14 -5.38 5.88 31.70 0.19 -5.19 16 14 C -0.11 -3.45 6.91 31.91 0.22 -3.23 16 15 C -0.11 -3.68 6.83 31.67 0.22 -3.47 16 16 C -0.13 -5.34 4.20 31.32 0.13 -5.21 16 17 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 18 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 20 H 0.04 1.66 6.35 -2.39 -0.02 1.65 16 21 H 0.02 1.08 7.05 -2.38 -0.02 1.06 16 22 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 23 H 0.05 2.22 7.68 -2.39 -0.02 2.20 16 24 H 0.06 2.33 6.23 -2.38 -0.01 2.32 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.44 6.94 -2.39 -0.02 2.43 16 30 H 0.05 2.36 5.96 -2.39 -0.01 2.35 16 Total: -1.00 -65.60 230.79 4.30 -61.31 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.90 Total: 6.35 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.55 Total: -36.77 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.30 Total: -59.11 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.09 Total: -19.78 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.64 Total: 48.01 kcal Total: -65.60 4.30 -61.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260863056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.596 kcal (2) G-P(sol) polarization free energy of solvation -65.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds