Wall clock time and date at job start Thu Apr 9 2020 13:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.01768 * 2 1 4 4 C 1.54270 * 110.03243 * 238.60618 * 2 1 3 5 5 C 1.54897 * 104.31189 * 216.99147 * 4 2 1 6 6 C 1.55232 * 102.58816 * 37.92949 * 5 4 2 7 7 H 1.09000 * 110.47034 * 80.77835 * 6 5 4 8 8 C 1.52998 * 110.58095 * 203.33721 * 6 5 4 9 9 C 1.53879 * 110.07531 * 121.41437 * 2 1 3 10 10 O 1.42895 * 110.03417 * 238.59297 * 9 2 1 11 11 C 1.50706 * 110.03096 * 359.97438 * 9 2 1 12 12 H 1.07999 * 119.99976 * 91.62635 * 11 9 2 13 13 C 1.37875 * 119.99840 * 271.63185 * 11 9 2 14 14 N 1.31519 * 119.99909 * 7.35920 * 13 11 9 15 15 Si 1.86800 * 120.00052 * 187.35992 * 13 11 9 16 16 H 1.48496 * 109.46924 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47169 * 120.00171 * 15 13 11 18 18 H 1.48495 * 109.47136 * 240.00042 * 15 13 11 19 19 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46690 * 299.93650 * 1 2 3 21 21 H 1.09000 * 109.46898 * 59.93871 * 1 2 3 22 22 H 1.08996 * 110.48604 * 335.73448 * 4 2 1 23 23 H 1.08999 * 110.48561 * 98.24601 * 4 2 1 24 24 H 1.08997 * 110.75305 * 156.32527 * 5 4 2 25 25 H 1.08998 * 110.75092 * 279.69051 * 5 4 2 26 26 H 1.09002 * 109.47198 * 170.36725 * 8 6 5 27 27 H 1.09000 * 109.47509 * 290.36791 * 8 6 5 28 28 H 1.09000 * 109.47110 * 50.36979 * 8 6 5 29 29 H 0.96705 * 114.00111 * 179.97438 * 10 9 2 30 30 H 0.97005 * 119.99869 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3159 -1.4994 -0.7233 6 6 2.8891 -1.9398 0.7027 7 1 2.2794 -2.8422 0.6565 8 6 4.1178 -2.1700 1.5848 9 6 2.0582 -0.7533 1.2334 10 8 2.8833 0.1100 2.0181 11 6 0.9055 -1.2588 2.0623 12 1 0.5092 -2.2485 1.8895 13 6 0.3569 -0.4578 3.0412 14 7 0.7394 0.7953 3.1564 15 14 -0.9297 -1.1522 4.2039 16 1 -1.1845 -2.5758 3.8669 17 1 -0.4381 -1.0542 5.6018 18 1 -2.1898 -0.3785 4.0670 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5129 0.8906 21 1 -0.3633 0.5148 -0.8894 22 1 1.3146 -1.4660 -1.5967 23 1 2.3267 -0.0530 -2.0267 24 1 3.5347 -2.3650 -1.3485 25 1 4.1722 -0.8264 -0.6799 26 1 3.8019 -2.3099 2.6186 27 1 4.6486 -3.0588 1.2437 28 1 4.7784 -1.3053 1.5206 29 1 3.2469 -0.3072 2.8112 30 1 0.3531 1.3590 3.8449 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:02 Heat of formation + Delta-G solvation = -82.662246 kcal Electronic energy + Delta-G solvation = -12255.218314 eV Core-core repulsion = 10242.103372 eV Total energy + Delta-G solvation = -2013.114943 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.04628 -35.38338 -34.36021 -32.76351 -29.91401 -27.90455 -25.24153 -24.42266 -21.18739 -19.86645 -18.43401 -16.72333 -16.58510 -16.13652 -15.49356 -14.47861 -14.20699 -13.76146 -13.63109 -13.16769 -13.08715 -12.76834 -12.40528 -12.30428 -12.06604 -11.83064 -11.62893 -11.39931 -11.21261 -11.14228 -10.60303 -10.30942 -9.80932 -7.90840 -6.10219 1.38097 1.43384 1.51303 2.46311 3.26004 3.94333 4.02462 4.18114 4.43999 4.60578 4.74593 4.85786 4.91800 4.98822 5.01370 5.11889 5.16369 5.25904 5.31064 5.47521 5.51661 5.66781 5.76877 5.83451 5.88412 6.05128 6.33598 6.88567 7.47778 7.78230 9.05417 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.045579 B = 0.017685 C = 0.015531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.172388 B = 1582.902738 C = 1802.437678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.076 4.076 3 H 0.029 0.971 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.123 4.123 7 H 0.057 0.943 8 C -0.128 4.128 9 C 0.241 3.759 10 O -0.557 6.557 11 C -0.552 4.552 12 H 0.046 0.954 13 C 0.038 3.962 14 N -0.876 5.876 15 Si 0.927 3.073 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.287 1.287 19 H 0.044 0.956 20 H 0.037 0.963 21 H 0.035 0.965 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.349 0.651 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -4.499 -4.869 7.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 H 0.047 0.953 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.142 4.142 7 H 0.075 0.925 8 C -0.186 4.186 9 C 0.201 3.799 10 O -0.361 6.361 11 C -0.591 4.591 12 H 0.064 0.936 13 C -0.164 4.164 14 N -0.513 5.513 15 Si 0.754 3.246 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.213 1.213 19 H 0.063 0.937 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.194 0.806 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.945 -3.897 -5.247 7.169 hybrid contribution -0.828 -0.448 1.418 1.702 sum 2.117 -4.345 -3.828 6.166 Atomic orbital electron populations 1.21442 0.95464 1.00199 0.98699 1.21609 0.95654 0.97433 0.94802 0.95265 1.22404 0.97544 0.98819 0.96453 1.22533 0.97035 0.99482 0.95681 1.22675 0.96962 0.98953 0.95576 0.92453 1.21556 0.96986 1.01043 0.98968 1.19522 0.86945 0.85455 0.87943 1.86407 1.67895 1.43146 1.38615 1.21801 1.17795 1.00436 1.19036 0.93574 1.25511 0.97638 0.94691 0.98605 1.70335 1.42624 1.05838 1.32503 0.86004 0.79984 0.78815 0.79773 1.19482 1.20903 1.21322 0.93669 0.94435 0.94640 0.91527 0.91511 0.90530 0.92219 0.93903 0.91855 0.92868 0.80633 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.62 7.89 71.98 0.57 -4.05 16 2 C -0.08 -3.49 3.31 -10.07 -0.03 -3.52 16 3 H 0.03 1.47 7.96 -2.38 -0.02 1.45 16 4 C -0.11 -4.16 6.35 31.67 0.20 -3.96 16 5 C -0.11 -3.76 6.36 32.01 0.20 -3.56 16 6 C -0.12 -4.89 2.96 -9.60 -0.03 -4.92 16 7 H 0.06 2.34 7.70 -2.39 -0.02 2.33 16 8 C -0.13 -4.50 8.08 71.98 0.58 -3.91 16 9 C 0.24 11.65 0.93 -10.81 -0.01 11.64 16 10 O -0.56 -28.89 10.16 -148.98 -1.51 -30.40 16 11 C -0.55 -29.14 5.94 25.60 0.15 -28.99 16 12 H 0.05 2.46 7.59 -2.91 -0.02 2.44 16 13 C 0.04 2.05 4.20 84.65 0.36 2.40 16 14 N -0.88 -50.17 11.43 21.45 0.25 -49.93 16 15 Si 0.93 43.00 29.54 68.60 2.03 45.02 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 19 H 0.04 2.02 7.43 -2.39 -0.02 2.01 16 20 H 0.04 1.95 6.23 -2.39 -0.01 1.94 16 21 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 2.27 7.85 -2.39 -0.02 2.25 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 2.03 7.99 -2.39 -0.02 2.01 16 26 H 0.04 1.56 7.64 -2.39 -0.02 1.55 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.85 7.55 -2.39 -0.02 1.83 16 29 H 0.35 17.21 7.48 -74.05 -0.55 16.66 16 30 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -58.76 234.76 3.30 -55.46 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.55 Total: 18.72 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 1.99 Total: -38.88 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.25 Total: -49.93 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.51 Total: -30.40 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -58.76 3.30 -55.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.199 kcal (2) G-P(sol) polarization free energy of solvation -58.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds