Wall clock time and date at job start Thu Apr 9 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99907 * 2 1 4 4 C 1.50701 * 109.51920 * 304.55091 * 3 2 1 5 5 H 1.08003 * 119.99996 * 125.30009 * 4 3 2 6 6 C 1.37881 * 119.99938 * 305.28936 * 4 3 2 7 7 N 1.31509 * 119.99682 * 355.20259 * 6 4 3 8 8 Si 1.86798 * 119.99776 * 175.19682 * 6 4 3 9 9 H 1.48500 * 109.46802 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47475 * 300.00370 * 8 6 4 11 11 H 1.48501 * 109.46986 * 60.00796 * 8 6 4 12 12 C 1.53116 * 109.57471 * 64.70498 * 3 2 1 13 13 C 1.53041 * 109.27961 * 177.59233 * 12 3 2 14 14 N 1.46851 * 109.52053 * 300.82098 * 13 12 3 15 15 C 1.46849 * 111.19516 * 61.74426 * 14 13 12 16 16 C 1.53045 * 109.52113 * 298.25306 * 15 14 13 17 17 H 1.08998 * 109.47490 * 55.03488 * 1 2 3 18 18 H 1.09002 * 109.46971 * 175.03114 * 1 2 3 19 19 H 1.09005 * 109.47091 * 295.03011 * 1 2 3 20 20 H 1.00901 * 111.00083 * 123.95360 * 2 1 3 21 21 H 0.97010 * 119.99720 * 179.97438 * 7 6 4 22 22 H 1.09000 * 109.50598 * 297.53243 * 12 3 2 23 23 H 1.09002 * 109.50495 * 57.65384 * 12 3 2 24 24 H 1.08996 * 109.46261 * 180.80945 * 13 12 3 25 25 H 1.09000 * 109.45391 * 60.82872 * 13 12 3 26 26 H 1.00902 * 110.99814 * 185.83576 * 14 13 12 27 27 H 1.09001 * 109.45823 * 178.24428 * 15 14 13 28 28 H 1.08997 * 109.45938 * 58.26465 * 15 14 13 29 29 H 1.09000 * 109.50134 * 299.24079 * 16 15 14 30 30 H 1.09005 * 109.52962 * 179.14442 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4238 2.1302 -1.1699 5 1 0.9102 3.0663 -1.0074 6 6 1.5567 1.6295 -2.4477 7 7 2.2627 0.5398 -2.6567 8 14 0.7339 2.4988 -3.8817 9 1 1.0272 1.7655 -5.1393 10 1 -0.7342 2.5358 -3.6618 11 1 1.2542 3.8859 -3.9841 12 6 1.6038 2.0713 1.3043 13 6 2.2059 3.4781 1.3235 14 7 3.6677 3.3877 1.2154 15 6 4.0686 2.7617 -0.0511 16 6 3.5220 1.3335 -0.1113 17 1 -0.3634 0.5889 -0.8421 18 1 -0.3633 -1.0238 -0.0890 19 1 -0.3633 0.4348 0.9312 20 1 1.8306 -0.5261 0.7814 21 1 2.3559 0.1873 -3.5556 22 1 0.5178 2.1394 1.3690 23 1 1.9843 1.5010 2.1518 24 1 1.9409 3.9739 2.2573 25 1 1.8144 4.0520 0.4837 26 1 4.0949 4.2957 1.3211 27 1 5.1564 2.7373 -0.1156 28 1 3.6682 3.3392 -0.8843 29 1 3.9327 0.7517 0.7139 30 1 3.8067 0.8740 -1.0578 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:04 Heat of formation + Delta-G solvation = 6.459642 kcal Electronic energy + Delta-G solvation = -12256.956668 eV Core-core repulsion = 10279.999092 eV Total energy + Delta-G solvation = -1976.957577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.11071 -34.28612 -31.86871 -29.59471 -29.15348 -25.12537 -24.02533 -21.80093 -20.70146 -18.62480 -15.85713 -15.52640 -14.59835 -14.14503 -13.57633 -13.22189 -12.92353 -12.48988 -12.27530 -11.52955 -11.22055 -10.97621 -10.80009 -10.62629 -10.56985 -10.14163 -9.83615 -9.45889 -9.20623 -8.80253 -8.24891 -7.59410 -6.69542 -5.80256 -3.93888 3.32725 3.38831 3.41355 4.48405 5.09121 5.36759 5.77538 5.95647 6.09627 6.25616 6.47577 6.52557 6.55249 6.65112 6.70920 6.92525 6.94223 6.98855 7.21669 7.25897 7.53748 7.71171 7.91216 8.07516 8.17322 8.37920 8.69911 8.93372 9.26788 9.70889 11.19469 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.037396 B = 0.019561 C = 0.016587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.566809 B = 1431.045651 C = 1687.660863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.653 5.653 3 C 0.244 3.756 4 C -0.523 4.523 5 H 0.049 0.951 6 C 0.086 3.914 7 N -0.840 5.840 8 Si 0.872 3.128 9 H -0.288 1.288 10 H -0.279 1.279 11 H -0.281 1.281 12 C -0.137 4.137 13 C 0.073 3.927 14 N -0.694 5.694 15 C 0.071 3.929 16 C -0.091 4.091 17 H 0.073 0.927 18 H 0.032 0.968 19 H -0.009 1.009 20 H 0.298 0.702 21 H 0.254 0.746 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.323 0.677 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.021 0.979 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 2.794 4.292 5.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.279 5.279 3 C 0.154 3.846 4 C -0.561 4.561 5 H 0.067 0.933 6 C -0.120 4.120 7 N -0.475 5.475 8 Si 0.700 3.300 9 H -0.214 1.214 10 H -0.205 1.205 11 H -0.207 1.207 12 C -0.177 4.177 13 C -0.057 4.057 14 N -0.325 5.325 15 C -0.058 4.058 16 C -0.130 4.130 17 H 0.092 0.908 18 H 0.050 0.950 19 H 0.009 0.991 20 H 0.113 0.887 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.138 0.862 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.411 1.955 3.783 4.278 hybrid contribution -0.952 1.501 -0.521 1.852 sum -0.541 3.456 3.261 4.783 Atomic orbital electron populations 1.21876 0.90424 0.98545 0.99026 1.60609 1.05516 1.16097 1.45701 1.18534 0.91497 0.84537 0.89991 1.20752 1.38190 1.06495 0.90682 0.93302 1.24873 0.94666 0.94492 0.97963 1.70008 1.37078 1.20163 1.20238 0.87029 0.80357 0.79789 0.82870 1.21370 1.20506 1.20660 1.22328 0.98603 0.96203 1.00577 1.21718 0.87765 0.97716 0.98502 1.60454 1.08833 1.25836 1.37330 1.21850 0.97194 0.97543 0.89259 1.21457 0.96911 0.93177 1.01434 0.90823 0.94969 0.99094 0.88715 0.93559 0.93300 0.94329 0.93612 0.94567 0.86196 0.93482 0.94140 0.96053 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 10.02 60.06 0.60 1.74 16 2 N -0.65 -15.55 5.56 -108.24 -0.60 -16.15 16 3 C 0.24 5.84 0.32 -132.64 -0.04 5.79 16 4 C -0.52 -13.65 4.76 -34.44 -0.16 -13.81 16 5 H 0.05 1.31 6.69 -52.48 -0.35 0.95 16 6 C 0.09 2.31 4.94 -17.82 -0.09 2.22 16 7 N -0.84 -23.27 10.90 55.43 0.60 -22.66 16 8 Si 0.87 20.86 29.54 -169.99 -5.02 15.83 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C -0.14 -2.95 4.63 -26.65 -0.12 -3.08 16 13 C 0.07 1.44 6.34 -3.83 -0.02 1.42 16 14 N -0.69 -13.34 6.85 -113.81 -0.78 -14.11 16 15 C 0.07 1.50 6.34 -3.83 -0.02 1.47 16 16 C -0.09 -2.16 5.04 -26.65 -0.13 -2.29 16 17 H 0.07 1.80 6.56 -51.93 -0.34 1.46 16 18 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 19 H -0.01 -0.19 6.74 -51.93 -0.35 -0.54 16 20 H 0.30 6.59 8.82 -39.29 -0.35 6.24 16 21 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 22 H 0.05 1.05 6.76 -51.93 -0.35 0.70 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.77 6.68 -51.93 -0.35 0.42 16 26 H 0.32 5.29 8.90 -39.29 -0.35 4.94 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.94 7.31 -51.93 -0.38 0.56 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 2.53 6.29 -51.93 -0.33 2.20 16 LS Contribution 230.33 15.07 3.47 3.47 Total: -1.00 -27.55 230.33 -6.72 -34.27 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.39 Total: 5.89 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 0.00 Total: -6.53 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.78 Total: -52.93 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.55 -6.72 -34.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.726 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds