Wall clock time and date at job start Thu Apr 9 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99907 * 2 1 4 4 C 1.50701 * 109.51920 * 304.55091 * 3 2 1 5 5 H 1.08003 * 119.99996 * 125.30009 * 4 3 2 6 6 C 1.37881 * 119.99938 * 305.28936 * 4 3 2 7 7 N 1.31509 * 119.99682 * 355.20259 * 6 4 3 8 8 Si 1.86798 * 119.99776 * 175.19682 * 6 4 3 9 9 H 1.48500 * 109.46802 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47475 * 300.00370 * 8 6 4 11 11 H 1.48501 * 109.46986 * 60.00796 * 8 6 4 12 12 C 1.53116 * 109.57471 * 64.70498 * 3 2 1 13 13 C 1.53041 * 109.27961 * 177.59233 * 12 3 2 14 14 N 1.46851 * 109.52053 * 300.82098 * 13 12 3 15 15 C 1.46849 * 111.19516 * 61.74426 * 14 13 12 16 16 C 1.53045 * 109.52113 * 298.25306 * 15 14 13 17 17 H 1.08998 * 109.47490 * 55.03488 * 1 2 3 18 18 H 1.09002 * 109.46971 * 175.03114 * 1 2 3 19 19 H 1.09005 * 109.47091 * 295.03011 * 1 2 3 20 20 H 1.00901 * 111.00083 * 123.95360 * 2 1 3 21 21 H 0.97010 * 119.99720 * 179.97438 * 7 6 4 22 22 H 1.09000 * 109.50598 * 297.53243 * 12 3 2 23 23 H 1.09002 * 109.50495 * 57.65384 * 12 3 2 24 24 H 1.08996 * 109.46261 * 180.80945 * 13 12 3 25 25 H 1.09000 * 109.45391 * 60.82872 * 13 12 3 26 26 H 1.00902 * 110.99814 * 185.83576 * 14 13 12 27 27 H 1.09001 * 109.45823 * 178.24428 * 15 14 13 28 28 H 1.08997 * 109.45938 * 58.26465 * 15 14 13 29 29 H 1.09000 * 109.50134 * 299.24079 * 16 15 14 30 30 H 1.09005 * 109.52962 * 179.14442 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4238 2.1302 -1.1699 5 1 0.9102 3.0663 -1.0074 6 6 1.5567 1.6295 -2.4477 7 7 2.2627 0.5398 -2.6567 8 14 0.7339 2.4988 -3.8817 9 1 1.0272 1.7655 -5.1393 10 1 -0.7342 2.5358 -3.6618 11 1 1.2542 3.8859 -3.9841 12 6 1.6038 2.0713 1.3043 13 6 2.2059 3.4781 1.3235 14 7 3.6677 3.3877 1.2154 15 6 4.0686 2.7617 -0.0511 16 6 3.5220 1.3335 -0.1113 17 1 -0.3634 0.5889 -0.8421 18 1 -0.3633 -1.0238 -0.0890 19 1 -0.3633 0.4348 0.9312 20 1 1.8306 -0.5261 0.7814 21 1 2.3559 0.1873 -3.5556 22 1 0.5178 2.1394 1.3690 23 1 1.9843 1.5010 2.1518 24 1 1.9409 3.9739 2.2573 25 1 1.8144 4.0520 0.4837 26 1 4.0949 4.2957 1.3211 27 1 5.1564 2.7373 -0.1156 28 1 3.6682 3.3392 -0.8843 29 1 3.9327 0.7517 0.7139 30 1 3.8067 0.8740 -1.0578 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:04 Heat of formation + Delta-G solvation = -14.248972 kcal Electronic energy + Delta-G solvation = -12257.854661 eV Core-core repulsion = 10279.999092 eV Total energy + Delta-G solvation = -1977.855569 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.87716 -36.02968 -33.87416 -31.32629 -30.92187 -27.14375 -25.80174 -23.50625 -22.47443 -20.50452 -17.56933 -17.47189 -16.50262 -15.96220 -15.28301 -15.05372 -14.65409 -14.25355 -14.09694 -13.31571 -13.04756 -12.81740 -12.57834 -12.46756 -12.42781 -11.98563 -11.73534 -11.24733 -11.01578 -10.74257 -10.26764 -9.21226 -8.51240 -7.83081 -6.01029 1.40785 1.44292 1.48331 2.49644 3.34231 3.53368 3.99416 4.35083 4.43467 4.57194 4.69908 4.78840 4.85362 4.92266 5.04809 5.15567 5.22817 5.26357 5.38695 5.44595 5.68692 5.77703 5.98539 6.25660 6.45248 6.72270 6.78421 7.03187 7.41232 7.65779 9.14015 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.037396 B = 0.019561 C = 0.016587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.566809 B = 1431.045651 C = 1687.660863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.672 5.672 3 C 0.237 3.763 4 C -0.522 4.522 5 H 0.038 0.962 6 C 0.048 3.952 7 N -0.863 5.863 8 Si 0.921 3.079 9 H -0.289 1.289 10 H -0.279 1.279 11 H -0.279 1.279 12 C -0.132 4.132 13 C 0.075 3.925 14 N -0.687 5.687 15 C 0.078 3.922 16 C -0.088 4.088 17 H 0.045 0.955 18 H 0.047 0.953 19 H 0.006 0.994 20 H 0.308 0.692 21 H 0.250 0.750 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.019 0.981 26 H 0.343 0.657 27 H 0.067 0.933 28 H 0.017 0.983 29 H 0.024 0.976 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 3.479 5.260 6.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.299 5.299 3 C 0.147 3.853 4 C -0.561 4.561 5 H 0.056 0.944 6 C -0.156 4.156 7 N -0.499 5.499 8 Si 0.748 3.252 9 H -0.215 1.215 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.172 4.172 13 C -0.055 4.055 14 N -0.319 5.319 15 C -0.051 4.051 16 C -0.127 4.127 17 H 0.064 0.936 18 H 0.066 0.934 19 H 0.025 0.975 20 H 0.123 0.877 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.037 0.963 26 H 0.161 0.839 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.380 2.662 4.762 5.469 hybrid contribution -0.942 1.284 -0.780 1.773 sum -0.562 3.947 3.983 5.635 Atomic orbital electron populations 1.21762 0.89633 0.99148 0.98533 1.60520 1.06454 1.16390 1.46571 1.18564 0.91502 0.84720 0.90505 1.20906 1.37448 1.06106 0.91626 0.94363 1.25376 0.95259 0.95119 0.99843 1.70138 1.38227 1.21331 1.20195 0.86243 0.79437 0.78889 0.80598 1.21478 1.20499 1.20469 1.22216 0.98586 0.97124 0.99272 1.21700 0.87880 0.96557 0.99382 1.60385 1.08616 1.27225 1.35660 1.21683 0.98168 0.95865 0.89428 1.21350 0.96988 0.94579 0.99755 0.93594 0.93381 0.97534 0.87658 0.94057 0.93562 0.93705 0.90527 0.96279 0.83898 0.91492 0.96511 0.95757 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.56 10.02 127.69 1.28 3.84 16 2 N -0.67 -31.49 5.56 -496.37 -2.76 -34.26 16 3 C 0.24 11.13 0.32 2.86 0.00 11.14 16 4 C -0.52 -27.16 4.76 25.60 0.12 -27.04 16 5 H 0.04 2.04 6.69 -2.91 -0.02 2.02 16 6 C 0.05 2.56 4.94 84.66 0.42 2.98 16 7 N -0.86 -48.18 10.90 21.45 0.23 -47.95 16 8 Si 0.92 42.96 29.54 68.60 2.03 44.99 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 C -0.13 -5.43 4.63 30.65 0.14 -5.29 16 13 C 0.07 2.77 6.34 86.33 0.55 3.32 16 14 N -0.69 -24.53 6.85 -513.98 -3.52 -28.05 16 15 C 0.08 3.20 6.34 86.33 0.55 3.75 16 16 C -0.09 -4.10 5.04 30.65 0.15 -3.94 16 17 H 0.05 2.22 6.56 -2.39 -0.02 2.21 16 18 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 19 H 0.01 0.25 6.74 -2.38 -0.02 0.24 16 20 H 0.31 13.25 8.82 -89.69 -0.79 12.46 16 21 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 22 H 0.05 1.90 6.76 -2.39 -0.02 1.89 16 23 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 25 H 0.02 0.78 6.68 -2.39 -0.02 0.76 16 26 H 0.34 10.13 8.90 -89.69 -0.80 9.33 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.02 0.76 7.31 -2.39 -0.02 0.74 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 3.41 6.29 -2.38 -0.02 3.40 16 Total: -1.00 -56.91 230.33 -1.26 -58.17 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.45 Total: 18.34 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 3.21 Total: -11.24 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -6.05 Total: -110.25 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -56.91 -1.26 -58.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.917 kcal (2) G-P(sol) polarization free energy of solvation -56.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds